Basic Information
Locus ID:
Ceq04G0792
Species & Taxonomic ID:
Casuarina equisetifolia & 3523
Genome Assembly:
GCA_028551475.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 9024132 | 9031541 | + | Ceq04G0792 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.44 | 87,628.40 Da | 45.57 | 107.47 | 0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 390 | 433 | 2.91401E-24 | - |
| CDD | cd16664 | RING-Ubox_PUB | 10 | 53 | 2.79297E-19 | - |
| Pfam | PF04564 | U-box domain | 388 | 456 | 1.2E-19 | IPR003613 |
| Pfam | PF04564 | U-box domain | 6 | 78 | 3.0E-18 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 478 | 756 | 3.95E-16 | IPR016024 |
| SUPERFAMILY | SSF48371 | ARM repeat | 107 | 385 | 4.11E-11 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 4 | 80 | 1.52E-25 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 386 | 460 | 1.93E-26 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 85 | 2.2E-27 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 470 | 775 | 2.3E-16 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 387 | 460 | 9.9E-27 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 95 | 384 | 1.7E-12 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 389 | 454 | 1.4E-35 | IPR003613 |
| SMART | SM00504 | Ubox_2 | 9 | 74 | 5.0E-29 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 385 | 461 | 34.155014 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 5 | 81 | 38.020584 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G52450.1 | plant U-box 22. Encodes a cytoplasmically localized U-box domain E3 ubiquitin ligase protein that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity. | 0 |
| RefSeq | XP_021822385.1 | E3 ubiquitin-protein ligase PUB24-like [Prunus avium] | 0 |
| Q9SVC6 | E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis thaliana OX=3702 GN=PUB22 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J4ZKW1 | RING-type E3 ubiquitin transferase OS=Nyssa sinensis OX=561372 GN=F0562_015928 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology