Basic Information
Locus ID:
Ceq04G0399
Species & Taxonomic ID:
Casuarina equisetifolia & 3523
Genome Assembly:
GCA_028551475.1
Description:
U3 small nucleolar RNA-associated protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 4806803 | 4820561 | + | Ceq04G0399 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.89 | 133,119.44 Da | 45.41 | 80.77 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 917 | 947 | 3.1E-4 | IPR001680 |
| Pfam | PF08149 | BING4CT (NUC141) domain | 995 | 1073 | 9.0E-33 | IPR012952 |
| Pfam | PF01782 | RimM N-terminal domain | 82 | 156 | 6.6E-14 | IPR002676 |
| SUPERFAMILY | SSF50346 | PRC-barrel domain | 150 | 233 | 3.92E-7 | IPR011033 |
| SUPERFAMILY | SSF50447 | Translation proteins | 80 | 156 | 1.77E-9 | IPR009000 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 740 | 1023 | 3.82E-33 | IPR036322 |
| SUPERFAMILY | SSF53448 | Nucleotide-diphospho-sugar transferases | 264 | 645 | 1.94E-36 | IPR029044 |
| Gene3D | G3DSA:2.130.10.10 | - | 882 | 1032 | 1.3E-18 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 727 | 881 | 1.7E-5 | IPR015943 |
| Gene3D | G3DSA:3.90.550.10 | Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 251 | 580 | 3.9E-36 | IPR029044 |
| Gene3D | G3DSA:2.30.30.240 | - | 148 | 238 | 1.9E-14 | - |
| SMART | SM00320 | WD40_4 | 733 | 772 | 71.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 950 | 984 | 14.0 | IPR001680 |
| SMART | SM01033 | BING4CT_2 | 994 | 1074 | 8.8E-53 | IPR012952 |
| SMART | SM00320 | WD40_4 | 908 | 947 | 2.8E-8 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 915 | 949 | 11.602863 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 915 | 956 | 14.953072 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 934 | 948 | - | IPR019775 |
| Hamap | MF_00014 | Ribosome maturation factor RimM [rimM]. | 80 | 233 | 13.164271 | IPR011961 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1112 | 1133 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G10530.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_041027993.1 | uncharacterized protein LOC121267962 isoform X2 [Juglans microcarpa x Juglans regia] | 0 |
| Q9P4X3 | Probable U3 small nucleolar RNA-associated protein 7 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=utp7 PE=3 SV=1 | 0 | |
| TrEMBL | A0A6A1WAV9 | Ribosome maturation factor RimM OS=Morella rubra OX=262757 GN=CJ030_MR2G013180 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg34381 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_24174 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah022375 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g056890 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg59026, Sbi_jg63605 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg23286 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00012865 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl02445, Sgl07598 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000012275, gene:ENSEOMG00000030474 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0024360, CQ.Regalona.r1.3BG0025190 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30170300 |
| Apiaceae | Apium graveolens | 1 | Ag2G00493 |
| Arecaceae | Cocos nucifera | 1 | COCNU_02G013980 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103713730 |
| Asteraceae | Flaveria trinervia | 1 | Ftri15G08245 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT3G10530.1, AT3G23850.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10016037m.g.v1.0, Thhalv10020478m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g08810.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g054480.2N, BniB07g057600.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G0399 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G0499 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno08g05520 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0308s00015.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g15880 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-6491, nbisL1-mrna-9862 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.1160 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00028625 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb7G34532 |
| Poaceae | Echinochloa crus-galli | 6 | AH02.901, AH07.1933, BH02.1227, BH07.1907, CH02.1351 ... |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_5BG0426520, gene-QOZ80_8AG0632140 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0214620.1, HORVU.MOREX.r3.4HG0341160.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_062979 |
| Poaceae | Oryza coarctata | 2 | Oco01G003530, Oco02G003570 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g08770.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G144300 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0104423, Pt_Chr0200383, Pt_Chr0704378, Pt_Ctg00136 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr06G011170, Chr13G011810, Chr15G012760 |
| Poaceae | Thinopyrum elongatum | 3 | Tel1E01G617100, Tel4E01G051800, Tel4E01G114100 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC1AG055600, gene_TRIDC4AG038440 ... |
| Poaceae | Triticum aestivum | 5 | TraesCS1B02G399700.1, TraesCS1D02G385600.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb272000_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-18960 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g16369, Zma_g16373 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG07.185, evm.TU.LG15.59 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g13600 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_4_RagTag.1556 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-11369 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-13230 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-4382 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000008l.845 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00000038 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-2207 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-9609 |
| Salicaceae | Populus euphratica | 2 | populus_peu06175, populus_peu20018 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132639832, gene-LOC132641614 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107018485 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_153 |
| Tamaricaceae | Tamarix chinensis | 1 | TC11G1641 |
| Zosteraceae | Zostera marina | 5 | Zosma04g08080.v3.1, Zosma04g08090.v3.1, Zosma04g08100.v3.1 ... |