Basic Information
Locus ID:
Ceq03G2454
Species & Taxonomic ID:
Casuarina equisetifolia & 3523
Genome Assembly:
GCA_028551475.1
Description:
Poly(A) polymerase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 28179485 | 28195500 | - | Ceq03G2454 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.43 | 123,943.62 Da | 48.50 | 73.49 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05402 | NT_PAP_TUTase | 391 | 545 | 8.75226E-30 | - |
| Pfam | PF04926 | Poly(A) polymerase predicted RNA binding domain | 697 | 755 | 8.2E-12 | IPR007010 |
| Pfam | PF04926 | Poly(A) polymerase predicted RNA binding domain | 759 | 829 | 6.0E-6 | IPR007010 |
| Pfam | PF04928 | Poly(A) polymerase central domain | 372 | 695 | 3.5E-103 | IPR007012 |
| Pfam | PF01909 | Nucleotidyltransferase domain | 416 | 503 | 2.7E-10 | IPR002934 |
| SUPERFAMILY | SSF81631 | PAP/OAS1 substrate-binding domain | 546 | 695 | 1.02E-64 | - |
| SUPERFAMILY | SSF55003 | PAP/Archaeal CCA-adding enzyme, C-terminal domain | 696 | 822 | 1.29E-37 | IPR011068 |
| SUPERFAMILY | SSF81301 | Nucleotidyltransferase | 372 | 544 | 3.36E-45 | IPR043519 |
| Gene3D | G3DSA:1.10.1410.10 | - | 370 | 693 | 7.4E-154 | - |
| Gene3D | G3DSA:3.30.460.10 | Beta Polymerase, domain 2 | 383 | 539 | 7.4E-154 | IPR043519 |
| Gene3D | G3DSA:3.30.70.590 | Poly(A) polymerase predicted RNA binding domain | 697 | 812 | 3.5E-30 | - |
| Gene3D | G3DSA:2.60.120.620 | q2cbj1_9rhob like domain | 159 | 337 | 2.5E-5 | - |
| SMART | SM00702 | p4hc | 152 | 336 | 2.8E-34 | IPR006620 |
| ProSiteProfiles | PS51471 | Fe(2+) 2-oxoglutarate dioxygenase domain profile. | 238 | 337 | 11.398181 | IPR005123 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 10 | 25 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 862 | 880 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 954 | 973 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1036 | 1052 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 43 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 825 | 900 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1035 | 1057 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17980.1 | poly(A) polymerase 1. Encodes a poly(A) polymerase. Located in the nucleus. | 0 |
| RefSeq | XP_040996645.1 | nuclear poly(A) polymerase 1 [Juglans microcarpa x Juglans regia] | 0 |
| Q9LMT2 | Nuclear poly(A) polymerase 1 OS=Arabidopsis thaliana OX=3702 GN=PAPS1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A498I0X8 | polynucleotide adenylyltransferase OS=Malus domestica OX=3750 GN=DVH24_023540 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology