Basic Information
Locus ID:
Ceq03G2284
Species & Taxonomic ID:
Casuarina equisetifolia & 3523
Genome Assembly:
GCA_028551475.1
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 26355648 | 26362174 | - | Ceq03G2284 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.98 | 55,121.59 Da | 39.68 | 91.27 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17939 | DEADc_EIF4A | 120 | 318 | 7.70337E-137 | - |
| CDD | cd18787 | SF2_C_DEAD | 329 | 459 | 4.60126E-60 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 141 | 302 | 1.1E-39 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 342 | 450 | 1.5E-28 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 185 | 470 | 2.14E-74 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 325 | 489 | 1.7E-57 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 106 | 324 | 1.7E-66 | IPR027417 |
| SMART | SM00487 | ultradead3 | 135 | 332 | 1.7E-56 | IPR014001 |
| SMART | SM00490 | helicmild6 | 369 | 450 | 4.1E-31 | IPR001650 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 116 | 144 | 10.40907 | IPR014014 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 147 | 317 | 29.176374 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 328 | 489 | 25.516842 | IPR001650 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 263 | 271 | - | IPR000629 |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G54270.1 | eif4a-2. member of eIF4A - eukaryotic initiation factor 4A | 0 |
| RefSeq | XP_042965122.1 | eukaryotic initiation factor 4A-2 [Carya illinoinensis] | 0 |
| Q40465 | Eukaryotic initiation factor 4A-11 OS=Nicotiana tabacum OX=4097 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8T1N5X9 | Eukaryotic initiation factor 4A OS=Carya illinoinensis OX=32201 GN=CIPAW_16G026900 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology