Basic Information
Locus ID:
Ceq03G2203
Species & Taxonomic ID:
Casuarina equisetifolia & 3523
Genome Assembly:
GCA_028551475.1
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 25563689 | 25564870 | + | Ceq03G2203 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.61 | 44,054.73 Da | 58.90 | 76.64 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 150 | 193 | 2.11535E-17 | - |
| Pfam | PF13639 | Ring finger domain | 150 | 193 | 3.0E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 145 | 200 | 2.36E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 126 | 201 | 7.0E-22 | IPR013083 |
| SMART | SM00184 | ring_2 | 151 | 192 | 2.9E-7 | IPR001841 |
| SMART | SM01197 | FANCL_C_2 | 147 | 200 | 0.0085 | - |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 151 | 193 | 12.799091 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 372 | 393 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 277 | 308 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 291 | 306 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G72220.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_018833935.1 | RING-H2 finger protein ATL54-like [Juglans regia] | 0 |
| Q8LFY8 | RING-H2 finger protein ATL54 OS=Arabidopsis thaliana OX=3702 GN=ATL54 PE=2 SV=2 | 0 | |
| TrEMBL | A0A5N6RKL4 | RING-type E3 ubiquitin transferase OS=Carpinus fangiana OX=176857 GN=FH972_017903 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology