Basic Information
Locus ID:
Ceq03G2111
Species & Taxonomic ID:
Casuarina equisetifolia & 3523
Genome Assembly:
GCA_028551475.1
Description:
VID27 cytoplasmic protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 24620905 | 24627411 | + | Ceq03G2111 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.71 | 150,409.52 Da | 35.29 | 83.56 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01535 | PPR repeat | 395 | 420 | 0.48 | IPR002885 |
| Pfam | PF08553 | VID27 C-terminal WD40-like domain | 982 | 1297 | 1.3E-42 | IPR013863 |
| Pfam | PF01535 | PPR repeat | 199 | 225 | 0.083 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 126 | 156 | 5.8E-8 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 322 | 350 | 0.13 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 423 | 469 | 5.0E-11 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 521 | 568 | 6.8E-8 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 496 | 519 | 0.031 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 227 | 256 | 1.5E-7 | IPR002885 |
| SUPERFAMILY | SSF101908 | Putative isomerase YbhE | 976 | 1252 | 6.41E-14 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 1050 | 1285 | 9.8E-10 | IPR015943 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 280 | 370 | 3.5E-11 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 186 | 279 | 6.1E-17 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 371 | 494 | 6.4E-21 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 11 | 183 | 2.3E-23 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 496 | 710 | 8.1E-35 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 227 | 259 | 5.4E-8 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 525 | 557 | 1.4E-7 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 423 | 457 | 1.5E-9 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 126 | 159 | 9.2E-8 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 522 | 556 | 10.632519 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 421 | 455 | 11.871145 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 225 | 259 | 11.158661 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 124 | 158 | 12.561707 | IPR002885 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 722 | 744 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 745 | 762 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 722 | 764 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33400.1 | Vacuolar import/degradation, Vid27-related protein. | 0 |
| RefSeq | XP_035546807.1 | pentatricopeptide repeat-containing protein At2g04860 isoform X1 [Juglans regia] | 0 |
| P40781 | Protein CYPRO4 OS=Cynara cardunculus OX=4265 GN=CYPRO4 PE=2 SV=1 | 0 | |
| TrEMBL | A0A498HTF6 | VID27 domain-containing protein OS=Malus domestica OX=3750 GN=DVH24_012451 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg11973, jg22779, jg28679 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_14234, gene_18610 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah010358 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g218480 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg12527, Sbi_jg45787 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg20144 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00019710 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl42009, Sgl46785 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000014445, gene:ENSEOMG00000037978 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7BG0008630, CQ.Regalona.r1.9AG0015810 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30045270, pistato.v30112810 |
| Apiaceae | Apium graveolens | 3 | Ag10G02547, Ag9G00173, AgUnG01155 |
| Arecaceae | Cocos nucifera | 2 | COCNU_11G009160, COCNU_11G012530 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103699412, gene-LOC103710471 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_05.2548.V1.1, AsparagusV1_07.754.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri18G02428, Ftri1G06158, Ftri3G29125 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT3G19240.1, AT4G33400.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10020256m.g.v1.0, Thhalv10024654m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp3g17320.v2.2, Sp7g31100.v2.2 |
| Brassicaceae | Brassica nigra | 5 | BniB01g045030.2N, BniB01g059540.2N, BniB03g009510.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq03G2111, Ceq07G2150 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G2380 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g07630 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0317s00007.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g10780 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-1268, nbisL1-mrna-9431 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG06.437, evm.TU.LG08.7 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00007601 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb0G37736, Lb3G17141 |
| Poaceae | Echinochloa crus-galli | 6 | AH07.3744, AH07.565, BH07.3567, BH07.696, CH07.3633 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_2AG0103590, gene-QOZ80_2AG0148560 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.6HG0569700.1, HORVU.MOREX.r3.6HG0622700.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_020952, gene-QYE76_026281 |
| Poaceae | Oryza coarctata | 4 | Oco03G003950, Oco03G023890, Oco04G003890, Oco04G024440 |
| Poaceae | Oryza sativa | 2 | LOC_Os02g08190.1, LOC_Os02g54780.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_04G058600, gene-BS78_04G302600 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0202340, Pt_Chr0202940, Pt_Chr0202952 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr06G000660, Chr06G034080, Chr09G017980, Chr13G002160 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel6E01G310200, Tel6E01G622300 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC6AG020890, gene_TRIDC6AG052530 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS6A02G150500.1, TraesCS6A02G350000.2 ... |
| Poaceae | Zea mays | 3 | Zm00001eb192690_P001, Zm00001eb206560_P001 ... |
| Poaceae | Zoysia japonica | 4 | nbis-gene-33605, nbis-gene-44196, nbis-gene-57118 ... |
| Poaceae | Zoysia macrostachya | 3 | Zma_g12299, Zma_g14597, Zma_g15053 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG02.468, evm.TU.LG08.1903, evm.TU.LG09.1709 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc03g13890, gene.Posoc03g20400 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_2_RagTag.312, evm.TU.Scaffold_8_RagTag.952 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-4877, nbisL1-mrna-8868 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-14617, nbisL1-mrna-8188 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-20662, nbisL1-mrna-9826 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000009l.766, evm.TU.utg000018l.300 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00002936, Maker00005502 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-11425, nbisL1-mrna-2492 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-23828, nbisL1-mrna-6074 |
| Salicaceae | Populus euphratica | 3 | populus_peu09004, populus_peu31977, populus_peu36345 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132599052, gene-LOC132627866 |
| Solanaceae | Solanum chilense | 2 | SOLCI002762300, SOLCI006084800 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107006728, gene-LOC107017657 |
| Tamaricaceae | Reaumuria soongarica | 3 | MSTRG.14294_chr08_-, gene_1227, gene_16810 |
| Tamaricaceae | Tamarix chinensis | 2 | TC04G2518, TC12G1112 |
| Zosteraceae | Zostera marina | 1 | Zosma03g06190.v3.1 |