Basic Information
Locus ID:
Ceq03G2061
Species & Taxonomic ID:
Casuarina equisetifolia & 3523
Genome Assembly:
GCA_028551475.1
Description:
Ubiquitin receptor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 24102217 | 24109638 | - | Ceq03G2061 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.37 | 53,665.16 Da | 57.53 | 85.44 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14379 | UBA1_Rad23_plant | 271 | 320 | 2.99977E-29 | - |
| CDD | cd01805 | Ubl_Rad23 | 97 | 170 | 8.38897E-31 | - |
| CDD | cd14382 | UBA2_RAD23_plant | 456 | 498 | 1.59884E-23 | - |
| Pfam | PF00627 | UBA/TS-N domain | 280 | 315 | 2.1E-13 | IPR015940 |
| Pfam | PF09280 | XPC-binding domain | 379 | 434 | 9.2E-22 | IPR015360 |
| Pfam | PF00627 | UBA/TS-N domain | 460 | 495 | 4.1E-12 | IPR015940 |
| Pfam | PF00240 | Ubiquitin family | 99 | 172 | 5.0E-19 | IPR000626 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 375 | 441 | 1.57E-21 | IPR036353 |
| SUPERFAMILY | SSF46934 | UBA-like | 274 | 326 | 1.97E-11 | IPR009060 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 97 | 175 | 1.47E-22 | IPR029071 |
| SUPERFAMILY | SSF46934 | UBA-like | 443 | 502 | 1.61E-14 | IPR009060 |
| Gene3D | G3DSA:1.10.8.10 | - | 452 | 499 | 3.1E-23 | - |
| Gene3D | G3DSA:1.10.10.540 | - | 370 | 434 | 1.3E-26 | IPR036353 |
| Gene3D | G3DSA:3.10.20.90 | - | 94 | 176 | 6.8E-29 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 270 | 320 | 2.8E-21 | - |
| SMART | SM00165 | uba_6 | 277 | 317 | 1.8E-4 | IPR015940 |
| SMART | SM00165 | uba_6 | 460 | 497 | 9.3E-9 | IPR015940 |
| SMART | SM00213 | ubq_7 | 97 | 171 | 4.9E-22 | IPR000626 |
| SMART | SM00727 | CBM | 377 | 420 | 4.4E-5 | IPR006636 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 97 | 503 | 2.5E-112 | IPR004806 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 457 | 498 | 14.763827 | IPR015940 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 97 | 175 | 19.455528 | IPR000626 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 275 | 318 | 12.402311 | IPR015940 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 471 | 485 | 1.3E-33 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 454 | 470 | 1.3E-33 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 486 | 501 | 1.3E-33 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 405 | 427 | 1.3E-33 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 326 | 351 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 176 | 193 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 176 | 238 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 194 | 238 | - | - |
| Coils | Coil | Coil | 24 | 44 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G02540.1 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_052185932.1 | ubiquitin receptor RAD23c-like [Diospyros lotus] | 0 |
| Q84L31 | Ubiquitin receptor RAD23c OS=Arabidopsis thaliana OX=3702 GN=RAD23C PE=1 SV=2 | 0 | |
| TrEMBL | A0A5N6RMU5 | Ubiquitin receptor RAD23 OS=Carpinus fangiana OX=176857 GN=FH972_018605 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology