Basic Information
Locus ID:
Ceq03G1998
Species & Taxonomic ID:
Casuarina equisetifolia & 3523
Genome Assembly:
GCA_028551475.1
Description:
recombinational repair
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 23570479 | 23583098 | + | Ceq03G1998 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.70 | 112,616.08 Da | 47.33 | 80.83 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18008 | DEXDc_SHPRH-like | 270 | 598 | 5.88766E-86 | - |
| CDD | cd18793 | SF2_C_SNF | 854 | 963 | 2.07002E-53 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 856 | 954 | 2.0E-14 | IPR001650 |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 713 | 758 | 2.7E-7 | - |
| Pfam | PF00176 | SNF2 family N-terminal domain | 290 | 676 | 7.5E-68 | IPR000330 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 259 | 598 | 3.01E-45 | IPR027417 |
| SUPERFAMILY | SSF57850 | RING/U-box | 710 | 770 | 8.05E-12 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 606 | 1011 | 7.17E-57 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 470 | 611 | 2.8E-30 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 242 | 330 | 3.2E-11 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 363 | 451 | 3.0E-11 | IPR038718 |
| Gene3D | G3DSA:3.40.50.300 | - | 613 | 1011 | 2.2E-64 | IPR027417 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 707 | 764 | 7.7E-12 | IPR013083 |
| SMART | SM00490 | helicmild6 | 871 | 954 | 7.7E-17 | IPR001650 |
| SMART | SM00184 | ring_2 | 714 | 754 | 3.4E-4 | IPR001841 |
| SMART | SM00487 | ultradead3 | 266 | 575 | 1.1E-26 | IPR014001 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 285 | 560 | 11.886024 | IPR014001 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 714 | 750 | 11.441815 | IPR001841 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 846 | 1007 | 13.850107 | IPR001650 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 729 | 738 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 333 | 353 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G50410.1 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_023878192.1 | helicase-like transcription factor CHR28 isoform X1 [Quercus suber] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5N6RPX2 | Helicase-like transcription factor CHR28 OS=Carpinus fangiana OX=176857 GN=FH972_018678 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology