Basic Information
Locus ID:
Ceq03G1957
Species & Taxonomic ID:
Casuarina equisetifolia & 3523
Genome Assembly:
GCA_028551475.1
Description:
RNA-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 23162107 | 23172878 | + | Ceq03G1957 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.93 | 60,934.60 Da | 81.22 | 52.74 | -0.92 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12420 | RRM_RBPMS_like | 448 | 530 | 4.51387E-30 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 451 | 518 | 3.6E-6 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 439 | 540 | 8.37E-11 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 444 | 534 | 3.8E-15 | IPR012677 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 448 | 534 | 9.950859 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 167 | 301 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 338 | 363 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 238 | 301 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 211 | 225 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 338 | 353 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G21320.2 | nucleotide binding;nucleic acid binding. | 0 |
| RefSeq | XP_018848190.1 | RNA-binding protein 2-like [Juglans regia] | 0 |
| G7ID19 | RNA-binding protein 2 OS=Medicago truncatula OX=3880 GN=RBP2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2I4GWB3 | RNA-binding protein 2-like OS=Juglans regia OX=51240 GN=LOC109011431 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology