Basic Information
Locus ID:
Ceq03G1781
Species & Taxonomic ID:
Casuarina equisetifolia & 3523
Genome Assembly:
GCA_028551475.1
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 21190088 | 21197191 | + | Ceq03G1781 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.94 | 80,772.74 Da | 48.01 | 73.18 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02661 | Peptidase_C19E | 177 | 481 | 5.84884E-161 | - |
| Pfam | PF01753 | MYND finger | 71 | 108 | 6.4E-10 | IPR002893 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 178 | 481 | 6.2E-44 | IPR001394 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 67 | 112 | 9.59E-13 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 174 | 501 | 2.55E-87 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 173 | 492 | 4.5E-91 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 60 | 113 | 5.7E-15 | - |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 71 | 108 | 12.319962 | IPR002893 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 178 | 484 | 48.743729 | IPR028889 |
| ProSitePatterns | PS01360 | Zinc finger MYND-type signature. | 71 | 108 | - | IPR002893 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 179 | 194 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 618 | 644 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 618 | 632 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G31670.1 | ubiquitin-specific protease 18. | 0 |
| RefSeq | XP_030951157.1 | ubiquitin carboxyl-terminal hydrolase 18-like isoform X2 [Quercus lobata] | 0 |
| Q67XW5 | Ubiquitin carboxyl-terminal hydrolase 18 OS=Arabidopsis thaliana OX=3702 GN=UBP18 PE=2 SV=2 | 0 | |
| TrEMBL | A0A5N6RKN9 | Ubiquitin carboxyl-terminal hydrolase 18-like OS=Carpinus fangiana OX=176857 GN=FH972_017852 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology