Basic Information
Locus ID:
Ceq03G1652
Species & Taxonomic ID:
Casuarina equisetifolia & 3523
Genome Assembly:
GCA_028551475.1
Description:
Protein DA1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 19479424 | 19490647 | - | Ceq03G1652 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.90 | 53,634.90 Da | 50.62 | 68.43 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08368 | LIM | 141 | 216 | 3.25573E-4 | - |
| CDD | cd09396 | LIM_DA1 | 114 | 166 | 1.47298E-27 | - |
| Pfam | PF00412 | LIM domain | 114 | 168 | 7.4E-9 | IPR001781 |
| Pfam | PF12315 | Protein DA1 | 264 | 467 | 6.0E-95 | IPR022087 |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 140 | 199 | 1.43E-5 | - |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 107 | 139 | 5.7E-7 | - |
| Gene3D | G3DSA:2.10.110.10 | Cysteine Rich Protein | 109 | 187 | 3.1E-14 | - |
| SMART | SM00726 | uim | 41 | 60 | 0.059 | IPR003903 |
| SMART | SM00132 | lim_4 | 113 | 165 | 4.1E-11 | IPR001781 |
| SMART | SM00726 | uim | 72 | 91 | 0.094 | IPR003903 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 41 | 60 | 9.793426 | IPR003903 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 72 | 91 | 10.066204 | IPR003903 |
| ProSiteProfiles | PS50023 | LIM domain profile. | 112 | 172 | 11.8603 | IPR001781 |
| ProSitePatterns | PS00478 | LIM zinc-binding domain signature. | 114 | 148 | - | IPR001781 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19270.1 | DA1. | 0 |
| RefSeq | XP_035547197.1 | protein DA1-like isoform X2 [Juglans regia] | 0 |
| P0C7Q8 | Protein DA1 OS=Arabidopsis thaliana OX=3702 GN=DA1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5N6RM66 | LIM zinc-binding domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_018450 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology