Basic Information
Locus ID:
Ceq03G1649
Species & Taxonomic ID:
Casuarina equisetifolia & 3523
Genome Assembly:
GCA_028551475.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 19460810 | 19462967 | + | Ceq03G1649 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.27 | 35,121.43 Da | 50.06 | 70.43 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 124 | 168 | 7.78967E-32 | - |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 126 | 166 | 9.9E-9 | IPR018957 |
| SUPERFAMILY | SSF57850 | RING/U-box | 122 | 172 | 7.28E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 108 | 180 | 1.4E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 126 | 166 | 6.8E-9 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 126 | 167 | 13.669518 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 141 | 150 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 181 | 211 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 92 | 112 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 39 | 74 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19310.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_040997262.1 | E3 ubiquitin-protein ligase RNF185-like [Juglans microcarpa x Juglans regia] | 0 |
| Q09463 | E3 ubiquitin ligase rnf-5 OS=Caenorhabditis elegans OX=6239 GN=rnf-5 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5N6RMC2 | RING-type E3 ubiquitin transferase OS=Carpinus fangiana OX=176857 GN=FH972_018447 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology