Basic Information
Locus ID:
Ceq03G1215
Species & Taxonomic ID:
Casuarina equisetifolia & 3523
Genome Assembly:
GCA_028551475.1
Short Name:
UBP16
Description:
ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 14641585 | 14649330 | - | Ceq03G1215 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.82 | 121,420.05 Da | 47.76 | 69.53 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01753 | MYND finger | 82 | 119 | 6.4E-8 | IPR002893 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 604 | 906 | 2.9E-47 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 600 | 912 | 3.92E-86 | IPR038765 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 76 | 122 | 9.94E-11 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 73 | 123 | 9.1E-11 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 597 | 918 | 2.9E-93 | - |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 82 | 119 | 11.550815 | IPR002893 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 604 | 909 | 51.118427 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 605 | 620 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 177 | 197 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1028 | 1096 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 224 | 243 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 167 | 211 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 987 | 1015 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 928 | 1015 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1029 | 1088 | - | - |
| Coils | Coil | Coil | 39 | 59 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G24560.1 | ubiquitin-specific protease 16. Encodes a ubiquitin-specific protease. There is no evidence for a phenotype in ubp16-1 mutants, however, double mutant analysis with ubp15 mutants reveals a role for UBP16 in plant development and cell proliferation. | 0 |
| RefSeq | XP_041016639.1 | LOW QUALITY PROTEIN: ubiquitin carboxyl-terminal hydrolase 17-like [Juglans microcarpa x Juglans regia] | 0 |
| Q9SB51 | Ubiquitin carboxyl-terminal hydrolase 16 OS=Arabidopsis thaliana OX=3702 GN=UBP16 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5N6R7H5 | Ubiquitin carboxyl-terminal hydrolase 16 OS=Carpinus fangiana OX=176857 GN=FH972_013689 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology