Basic Information
Locus ID:
Ceq03G1021
Species & Taxonomic ID:
Casuarina equisetifolia & 3523
Genome Assembly:
GCA_028551475.1
Description:
Receptor homology region, transmembrane domain- and RING domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 10948735 | 10954152 | + | Ceq03G1021 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.80 | 47,718.81 Da | 66.98 | 81.37 | 0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16486 | mRING-H2-C3H2C2D_ZSWM2 | 232 | 275 | 3.08007E-23 | - |
| CDD | cd02123 | PA_C_RZF_like | 11 | 162 | 6.14351E-51 | IPR044744 |
| Pfam | PF13639 | Ring finger domain | 232 | 275 | 2.4E-11 | IPR001841 |
| Pfam | PF02225 | PA domain | 58 | 140 | 3.3E-10 | IPR003137 |
| SUPERFAMILY | SSF52025 | PA domain | 75 | 156 | 1.28E-9 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 223 | 288 | 1.79E-19 | - |
| Gene3D | G3DSA:3.50.30.30 | - | 19 | 152 | 2.1E-24 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 193 | 280 | 6.9E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 233 | 274 | 2.8E-9 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 233 | 275 | 12.25323 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G71980.1 | Protease-associated (PA) RING/U-box zinc finger family protein. | 0 |
| RefSeq | XP_042988905.1 | receptor homology region, transmembrane domain- and RING domain-containing protein 2 isoform X2 [Carya illinoinensis] | 0 |
| Q8VZ14 | Receptor homology region, transmembrane domain- and RING domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=RMR2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8T1Q3L7 | RING-type domain-containing protein OS=Carya illinoinensis OX=32201 GN=CIPAW_07G160600 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology