Basic Information
Locus ID:
Ceq03G0812
Species & Taxonomic ID:
Casuarina equisetifolia & 3523
Genome Assembly:
GCA_028551475.1
Description:
High mobility group B protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 8664608 | 8667363 | + | Ceq03G0812 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.52 | 31,293.18 Da | 57.01 | 61.24 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16872 | ARID_HMGB9-like | 31 | 116 | 4.43226E-47 | - |
| Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 35 | 116 | 4.0E-19 | IPR001606 |
| SUPERFAMILY | SSF46774 | ARID-like | 27 | 124 | 4.06E-32 | IPR036431 |
| Gene3D | G3DSA:1.10.150.60 | - | 26 | 130 | 1.4E-27 | IPR036431 |
| SMART | SM01014 | ARID_2 | 26 | 116 | 1.6E-33 | - |
| SMART | SM00501 | bright_3 | 30 | 121 | 3.8E-33 | IPR001606 |
| ProSiteProfiles | PS51011 | ARID domain profile. | 29 | 120 | 25.311193 | IPR001606 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 207 | 221 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 204 | 249 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 223 | 239 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G76110.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_042990346.1 | high mobility group B protein 9 isoform X1 [Carya illinoinensis] | 0 |
| Q9SGS2 | High mobility group B protein 9 OS=Arabidopsis thaliana OX=3702 GN=HMGB9 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5B9G523 | ARID/BRIGHT DNA binding domain OS=Betula platyphylla OX=78630 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology