Basic Information
Locus ID:
Ceq03G0578
Species & Taxonomic ID:
Casuarina equisetifolia & 3523
Genome Assembly:
GCA_028551475.1
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 6401959 | 6410030 | + | Ceq03G0578 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.59 | 43,242.99 Da | 58.76 | 75.30 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 314 | 357 | 8.95934E-18 | - |
| Pfam | PF13947 | Wall-associated receptor kinase galacturonan-binding | 32 | 98 | 2.3E-17 | IPR025287 |
| Pfam | PF13639 | Ring finger domain | 313 | 357 | 3.4E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 307 | 362 | 3.53E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 280 | 361 | 5.0E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 315 | 356 | 7.5E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 315 | 357 | 13.035139 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G53110.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_041029110.1 | putative RING-H2 finger protein ATL21B isoform X1 [Juglans microcarpa x Juglans regia] | 0 |
| Q9SKK8 | RING-H2 finger protein ATL22 OS=Arabidopsis thaliana OX=3702 GN=ATL22 PE=2 SV=2 | 0 | |
| TrEMBL | A0A5N6R5M2 | RING-type domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_012015 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology