Basic Information
Locus ID:
Ceq03G0259
Species & Taxonomic ID:
Casuarina equisetifolia & 3523
Genome Assembly:
GCA_028551475.1
Description:
Holliday junction DNA helicase ruvB N-terminus
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 2917094 | 2924832 | + | Ceq03G0259 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.93 | 92,480.19 Da | 44.00 | 88.40 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00009 | AAA | 550 | 683 | 2.34414E-24 | - |
| Pfam | PF17862 | AAA+ lid domain | 706 | 748 | 4.4E-12 | IPR041569 |
| Pfam | PF00004 | ATPase family associated with various cellular activities (AAA) | 552 | 682 | 4.4E-38 | IPR003959 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 511 | 753 | 4.8E-60 | IPR027417 |
| Gene3D | G3DSA:1.10.8.60 | - | 684 | 754 | 1.0E-95 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 511 | 683 | 1.0E-95 | IPR027417 |
| SMART | SM00382 | AAA_5 | 548 | 685 | 1.5E-20 | IPR003593 |
| ProSitePatterns | PS00674 | AAA-protein family signature. | 655 | 674 | - | IPR003960 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 443 | 502 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 184 | 210 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 458 | 472 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 473 | 489 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 749 | 780 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G64110.2 | P-loop containing nucleoside triphosphate hydrolases superfamily protein. | 0 |
| RefSeq | XP_018829264.1 | uncharacterized protein LOC108997437 isoform X2 [Juglans regia] | 0 |
| Q9P7J5 | Uncharacterized AAA domain-containing protein C24B10.10c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPCC24B10.10c PE=3 SV=1 | 0 | |
| TrEMBL | A0A5N6R3A8 | AAA domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_012262 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology