Basic Information
Locus ID:
Ceq03G0214
Species & Taxonomic ID:
Casuarina equisetifolia & 3523
Genome Assembly:
GCA_028551475.1
Description:
Belongs to the ubiquitin-conjugating enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 2317528 | 2320453 | - | Ceq03G0214 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.00 | 31,700.65 Da | 50.90 | 91.41 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03140 | Plant protein of unknown function | 38 | 85 | 7.9E-15 | IPR004158 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 173 | 243 | 4.0E-18 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 173 | 240 | 5.1E-19 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 146 | 251 | 1.3E-23 | IPR016135 |
| SMART | SM00212 | ubc_7 | 120 | 254 | 1.1E-4 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 98 | 254 | 16.736778 | IPR000608 |
| ProSitePatterns | PS00183 | Ubiquitin-conjugating (UBC) active site signature. | 179 | 194 | - | IPR023313 |
KEGG Pathway
Pathway:
ko04013 (MAPK signaling pathway - fly)
map04013 (MAPK signaling pathway - fly)
ko04120 (Ubiquitin mediated proteolysis)
map04120 (Ubiquitin mediated proteolysis)
ko04141 (Protein processing in endoplasmic reticulum)
map04141 (Protein processing in endoplasmic reticulum)
ko04624 (Toll and Imd signaling pathway)
map04624 (Toll and Imd signaling pathway)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G41700.1 | ubiquitin conjugating enzyme 8. One of the polypeptides that constitute the ubiquitin-conjugating enzyme E2 | 0 |
| RefSeq | XP_043812886.1 | ubiquitin-conjugating enzyme E2 28-like isoform X2 [Manihot esculenta] | 0 |
| P35135 | Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum lycopersicum OX=4081 PE=2 SV=1 | 0 | |
| TrEMBL | A0A438DP54 | Ubiquitin-conjugating enzyme E2-17 kDa OS=Vitis vinifera OX=29760 GN=UBC4_3 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.3489.V1.1 |
| Casuarinaceae | Casuarina equisetifolia | 3 | Ceq03G0210, Ceq03G0214, Ceq03G0215 |