Basic Information
Locus ID:
Ceq03G0044
Species & Taxonomic ID:
Casuarina equisetifolia & 3523
Genome Assembly:
GCA_028551475.1
Description:
Pentatricopeptide repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 525916 | 531581 | + | Ceq03G0044 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.93 | 137,209.84 Da | 38.18 | 95.92 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13041 | PPR repeat family | 141 | 186 | 2.5E-7 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 304 | 351 | 2.1E-7 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 405 | 453 | 2.4E-10 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 245 | 270 | 0.0035 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 217 | 242 | 2.1E-4 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 276 | 301 | 0.17 | IPR002885 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 971 | 1156 | 4.0E-29 | IPR001245 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 579 | 618 | 5.3E-12 | IPR013210 |
| SUPERFAMILY | SSF52058 | L domain-like | 603 | 958 | 5.83E-49 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 970 | 1231 | 1.12E-48 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1014 | 1238 | 3.0E-53 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 303 | 358 | 8.1E-6 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 193 | 302 | 6.3E-21 | IPR011990 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 576 | 808 | 1.7E-60 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 809 | 986 | 3.4E-30 | IPR032675 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 60 | 192 | 8.9E-19 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 362 | 461 | 7.2E-21 | IPR011990 |
| SMART | SM00220 | serkin_6 | 926 | 1239 | 5.7E-10 | IPR000719 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 144 | 174 | 8.3E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 217 | 240 | 2.6E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 408 | 442 | 1.5E-6 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 308 | 340 | 1.0E-5 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 406 | 440 | 10.347525 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 212 | 246 | 8.593717 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 305 | 339 | 9.733692 | IPR002885 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 907 | 1222 | 24.824263 | IPR000719 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 142 | 176 | 9.624079 | IPR002885 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 1063 | 1075 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G47460.1 | Pentatricopeptide repeat (PPR) superfamily protein. | 0 |
| RefSeq | XP_023916481.1 | putative pentatricopeptide repeat-containing protein At5g47460 [Quercus suber] | 0 |
| Q9FGL1 | Putative pentatricopeptide repeat-containing protein At5g47460 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E103 PE=3 SV=1 | 0 | |
| TrEMBL | A0A2N9G7R7 | PPR_long domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS14077 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg15510 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_14888 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g104380 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg24165, Sbi_jg8008 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg12032 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00010758 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl52378, Sgl57669 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000004423 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0004580, CQ.Regalona.r1.5BG0004990 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30142500 |
| Apiaceae | Apium graveolens | 1 | Ag6G01715 |
| Asteraceae | Flaveria trinervia | 1 | Ftri14G30799 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G47460.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10000835m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g12180.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g064050.2N, BniB04g010200.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G0044 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G0048 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG10.1194 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00004190 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG10.926, evm.TU.LG17.914 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_16_RagTag.338 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-22588 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-12290 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-20192 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000022l.167 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00014200 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-18103 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-6536 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132635120 |
| Solanaceae | Solanum chilense | 1 | SOLCI002438100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107026631 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_14929 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G3807 |