Basic Information
Locus ID:
Ceq03G0024
Species & Taxonomic ID:
Casuarina equisetifolia & 3523
Genome Assembly:
GCA_028551475.1
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 273380 | 289029 | - | Ceq03G0024 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.82 | 81,713.71 Da | 41.82 | 89.07 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18794 | SF2_C_RecQ | 279 | 415 | 6.39947E-73 | - |
| CDD | cd18015 | DEXHc_RecQ1 | 70 | 278 | 1.20385E-129 | - |
| Pfam | PF00570 | HRDC domain | 617 | 675 | 3.8E-8 | IPR002121 |
| Pfam | PF16124 | RecQ zinc-binding | 447 | 488 | 1.2E-9 | IPR032284 |
| Pfam | PF09382 | RQC domain | 494 | 596 | 4.6E-6 | IPR018982 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 91 | 258 | 1.8E-19 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 307 | 405 | 2.9E-16 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 127 | 422 | 6.54E-58 | IPR027417 |
| SUPERFAMILY | SSF47819 | HRDC-like | 617 | 681 | 2.4E-5 | IPR010997 |
| Gene3D | G3DSA:1.10.10.10 | - | 493 | 594 | 5.1E-23 | IPR036388 |
| Gene3D | G3DSA:1.10.150.80 | HRDC domain | 612 | 681 | 7.0E-11 | IPR044876 |
| Gene3D | G3DSA:3.40.50.300 | - | 279 | 489 | 3.2E-62 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 51 | 278 | 9.5E-90 | IPR027417 |
| SMART | SM00490 | helicmild6 | 325 | 406 | 2.3E-27 | IPR001650 |
| SMART | SM00487 | ultradead3 | 84 | 287 | 5.6E-26 | IPR014001 |
| SMART | SM00956 | RQC_2 | 497 | 594 | 0.0014 | IPR018982 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 81 | 535 | 2.3E-159 | IPR004589 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 96 | 271 | 23.725199 | IPR014001 |
| ProSiteProfiles | PS50967 | HRDC domain profile. | 608 | 687 | 13.13752 | IPR002121 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 296 | 448 | 20.034523 | IPR001650 |
| Coils | Coil | Coil | 686 | 706 | - | - |
| Coils | Coil | Coil | 17 | 37 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G31360.1 | RECQ helicase L2. Encodes a (d)NTP-dependent 3'->5' DNA helicase. This protein can also disrupt D loop structures and may mediate branch migration of Holliday junctions when tested in vitro. The unwinding activity of the enzyme depends on the presence of divalent cations (Mg2+, Mn2+, or Ca2+, but not Zn2+).(d)NTPs are also required with ATP and dATP supporting the greatest amount of DNA unwinding in vitro. | 0 |
| RefSeq | XP_035543183.1 | ATP-dependent DNA helicase Q-like 2 isoform X1 [Juglans regia] | 0 |
| Q9FT73 | ATP-dependent DNA helicase Q-like 2 OS=Arabidopsis thaliana OX=3702 GN=RECQL2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6P9EG61 | ATP-dependent DNA helicase OS=Juglans regia OX=51240 GN=LOC109003363 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology