Basic Information
Locus ID:
Ceq02G2954
Species & Taxonomic ID:
Casuarina equisetifolia & 3523
Genome Assembly:
GCA_028551475.1
Description:
The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 32796858 | 32798296 | - | Ceq02G2954 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.85 | 30,014.00 Da | 40.24 | 82.46 | -0.07 |
Protein Domain:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G61520.1 | photosystem I light harvesting complex gene 3. PSI type III chlorophyll a/b-binding protein (Lhca3*1) | 0 |
| RefSeq | XP_030505394.1 | chlorophyll a-b binding protein 8, chloroplastic [Cannabis sativa] | 0 |
| P27522 | Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum OX=4081 GN=CAB8 PE=3 SV=1 | 0 | |
| TrEMBL | A0A6A1UH86 | Chlorophyll a-b binding protein, chloroplastic OS=Morella rubra OX=262757 GN=CJ030_MR0G013093 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg19216 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_8642 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah035892 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg39861, Sbi_jg55195 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg14467 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00014235 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl12359, Sgl17638 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000017960, gene:ENSEOMG00000036011 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0023110, CQ.Regalona.r1.1BG0001110 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30101810, pistato.v30112040 |
| Apiaceae | Apium graveolens | 3 | Ag2G02233, AgUnG00498, AgUnG01243 |
| Arecaceae | Cocos nucifera | 2 | COCNU_01G006920, COCNU_01G012850 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103718458, gene-LOC120112142 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.2124.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri15G11256 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G61520.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10023636m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g03060.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB02g059370.2N, BniB04g020930.2N, BniB07g047370.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq02G2941, Ceq02G2954 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl02G3068, Cgl03G0479 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g07640 |
| Dunaliellaceae | Dunaliella salina | 4 | Dusal.0027s00003.v1.0, Dusal.0027s00004.v1.0 ... |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g27440 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG08.812 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00008337, Pov_00008339 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb6G30997 |
| Poaceae | Echinochloa crus-galli | 3 | AH06.2269, BH07.3989, CH06.2291 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0544770, gene-QOZ80_6BG0498280 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_021341 |
| Poaceae | Oryza coarctata | 2 | Oco03G004870, Oco04G005060 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g10390.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G189000 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0202120 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr05G007810, Chr0G005680, Chr10G017910, Chr11G004710 |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G331000 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC6BG028780 |
| Poaceae | Triticum aestivum | 3 | TraesCS6A02G159800.1, TraesCS6B02G191500.1 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-10052, nbis-gene-41037 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g30808, Zma_g33057 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG08.1073, evm.TU.LG22.814 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g16670 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_5_RagTag.1678 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-14367, nbisL1-mrna-3389 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-10848, nbisL1-mrna-21435 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000003l.905, evm.TU.utg000006l.965 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00009805, Maker00013273 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-13895 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-15607, nbisL1-mrna-4633 |
| Salicaceae | Populus euphratica | 1 | populus_peu26841 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132629504, gene-LOC132636547 |
| Solanaceae | Solanum chilense | 2 | SOLCI000988100, SOLCI005200100 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107002211, gene-LOC107007169 |
| Tamaricaceae | Reaumuria soongarica | 3 | STRG.22943_chr05_-, gene_2174, gene_8148 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G2682 |
| Zosteraceae | Zostera marina | 1 | Zosma01g28630.v3.1 |