Basic Information
Locus ID:
Ceq02G2208
Species & Taxonomic ID:
Casuarina equisetifolia & 3523
Genome Assembly:
GCA_028551475.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 24105974 | 24110641 | + | Ceq02G2208 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.57 | 56,138.62 Da | 65.41 | 101.38 | 0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 439 | 481 | 2.3E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 423 | 486 | 4.71E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 404 | 487 | 1.8E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 440 | 480 | 1.9E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 440 | 481 | 12.194218 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G18770.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_030939578.1 | uncharacterized protein LOC115964401 [Quercus lobata] | 0 |
| P0CH30 | E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum OX=3635 GN=RING1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5N6R0F2 | RING-type domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_008015 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Casuarinaceae | Casuarina equisetifolia | 5 | Ceq01G1673, Ceq01G1674, Ceq02G2197, Ceq02G2208, Ceq09G0347 |
| Casuarinaceae | Casuarina glauca | 4 | Cgl01G1832, Cgl01G1833, Cgl01G1834, Cgl01G2060 |