Basic Information
Locus ID:
Ceq02G2070
Species & Taxonomic ID:
Casuarina equisetifolia & 3523
Genome Assembly:
GCA_028551475.1
Description:
zinc finger CCCH domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 20044949 | 20050754 | - | Ceq02G2070 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.18 | 46,497.29 Da | 29.35 | 75.78 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 257 | 290 | 0.0015 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 295 | 329 | 0.0021 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 134 | 169 | 3.6E-4 | IPR001680 |
| Pfam | PF18345 | Zinc finger domain | 105 | 123 | 3.9E-7 | - |
| SUPERFAMILY | SSF90229 | CCCH zinc finger | 99 | 124 | 1.83E-7 | IPR036855 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 131 | 418 | 1.1E-47 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 230 | 426 | 1.4E-33 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 124 | 229 | 3.2E-12 | IPR015943 |
| Gene3D | G3DSA:2.30.30.1190 | - | 86 | 123 | 5.6E-5 | - |
| SMART | SM00320 | WD40_4 | 334 | 377 | 6.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 293 | 330 | 1.6E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 209 | 246 | 3.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 253 | 290 | 0.0014 | IPR001680 |
| SMART | SM00320 | WD40_4 | 380 | 417 | 8.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 130 | 169 | 4.1E-5 | IPR001680 |
| SMART | SM00356 | c3hfinal6 | 99 | 125 | 3.9E-6 | IPR000571 |
| SMART | SM00356 | c3hfinal6 | 21 | 45 | 0.16 | IPR000571 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 260 | 293 | 9.467419 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 260 | 299 | 12.379869 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 137 | 169 | 11.022865 | - |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 20 | 46 | 10.352048 | IPR000571 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 137 | 178 | 14.017362 | IPR001680 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 99 | 126 | 14.886983 | IPR000571 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 277 | 291 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 156 | 170 | 9.9E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 317 | 331 | 9.9E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 277 | 291 | 9.9E-7 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 70 | 89 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 52 | 93 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G25440.1 | zinc finger WD40 repeat protein 1. | 0 |
| RefSeq | XP_042970760.1 | zinc finger CCCH domain-containing protein 48-like [Carya illinoinensis] | 0 |
| Q9FNZ2 | Zinc finger CCCH domain-containing protein 48 OS=Arabidopsis thaliana OX=3702 GN=ZFWD1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6A1VD35 | Zinc finger CCCH domain-containing protein 48 OS=Morella rubra OX=262757 GN=CJ030_MR6G019847 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology