Basic Information
Locus ID:
Ceq02G1848
Species & Taxonomic ID:
Casuarina equisetifolia & 3523
Genome Assembly:
GCA_028551475.1
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 17571043 | 17578372 | + | Ceq02G1848 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.61 | 92,507.65 Da | 54.70 | 67.98 | -0.63 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 514 | 643 | 2.8466E-63 | - |
| CDD | cd00201 | WW | 22 | 52 | 1.60782E-4 | IPR001202 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 526 | 634 | 2.8E-34 | IPR001650 |
| Pfam | PF00397 | WW domain | 21 | 51 | 2.9E-6 | IPR001202 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 319 | 489 | 1.8E-48 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 367 | 651 | 1.75E-75 | IPR027417 |
| SUPERFAMILY | SSF51045 | WW domain | 13 | 53 | 3.25E-8 | IPR036020 |
| Gene3D | G3DSA:3.40.50.300 | - | 505 | 675 | 1.4E-58 | IPR027417 |
| Gene3D | G3DSA:2.20.70.10 | - | 16 | 63 | 4.5E-5 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 270 | 504 | 2.3E-80 | IPR027417 |
| SMART | SM00490 | helicmild6 | 554 | 634 | 2.6E-34 | IPR001650 |
| SMART | SM00456 | ww_5 | 20 | 53 | 5.9E-6 | IPR001202 |
| SMART | SM00487 | ultradead3 | 314 | 517 | 1.0E-66 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 529 | 673 | 25.94009 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 326 | 500 | 31.182055 | IPR014001 |
| ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 19 | 53 | 11.1126 | IPR001202 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 446 | 454 | - | IPR000629 |
| ProSitePatterns | PS01159 | WW/rsp5/WWP domain signature. | 25 | 51 | - | IPR001202 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 668 | 805 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 59 | 120 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 26 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 100 | 120 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 265 | 294 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 277 | 291 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 60 | 81 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 726 | 756 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G14610.1 | DEAD box RNA helicase family protein. | 0 |
| RefSeq | XP_041003634.1 | DEAD-box ATP-dependent RNA helicase 14 isoform X1 [Juglans microcarpa x Juglans regia] | 0 |
| Q9LYJ9 | DEAD-box ATP-dependent RNA helicase 46 OS=Arabidopsis thaliana OX=3702 GN=RH46 PE=2 SV=2 | 0 | |
| TrEMBL | A0A6A1V8L0 | DEAD-box ATP-dependent RNA helicase 46 OS=Morella rubra OX=262757 GN=CJ030_MR6G015580 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology