Basic Information
Locus ID:
Ceq02G1793
Species & Taxonomic ID:
Casuarina equisetifolia & 3523
Genome Assembly:
GCA_028551475.1
Description:
zinc finger CCCH domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 17043980 | 17049181 | - | Ceq02G1793 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.93 | 49,615.73 Da | 30.68 | 77.34 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 158 | 193 | 8.3E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 321 | 355 | 2.5E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 283 | 316 | 1.8E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 155 | 445 | 1.02E-44 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 277 | 452 | 1.3E-23 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 119 | 276 | 8.6E-17 | IPR015943 |
| SMART | SM00320 | WD40_4 | 154 | 193 | 6.0E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 319 | 356 | 1.2E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 278 | 316 | 1.1E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 360 | 403 | 72.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 233 | 270 | 260.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 406 | 443 | 160.0 | IPR001680 |
| SMART | SM00356 | c3hfinal6 | 38 | 61 | 0.0028 | IPR000571 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 36 | 62 | 12.267424 | IPR000571 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 161 | 193 | 10.416506 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 285 | 325 | 11.176815 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 161 | 202 | 13.048234 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 285 | 316 | 8.729241 | - |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 303 | 317 | 7.2E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 343 | 357 | 7.2E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 180 | 194 | 7.2E-6 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G25440.1 | zinc finger WD40 repeat protein 1. | 0 |
| RefSeq | XP_030967527.1 | zinc finger CCCH domain-containing protein 17-like isoform X1 [Quercus lobata] | 0 |
| Q0DYP5 | Zinc finger CCCH domain-containing protein 17 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0677700 PE=2 SV=2 | 0 | |
| TrEMBL | A0A7N2R3M9 | Zinc finger CCCH domain-containing protein 48-like OS=Quercus lobata OX=97700 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology