Basic Information
Locus ID:
Ceq02G1547
Species & Taxonomic ID:
Casuarina equisetifolia & 3523
Genome Assembly:
GCA_028551475.1
Description:
TPL-binding domain in jasmonate signalling
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 14577125 | 14585254 | + | Ceq02G1547 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.86 | 100,539.35 Da | 52.73 | 80.77 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15539 | PHD1_AIRE | 551 | 591 | 1.25787E-17 | - |
| Pfam | PF16135 | Tify domain binding domain | 244 | 299 | 5.0E-12 | IPR032308 |
| Pfam | PF00628 | PHD-finger | 552 | 593 | 8.5E-8 | IPR019787 |
| Pfam | PF16135 | Tify domain binding domain | 501 | 535 | 3.0E-8 | IPR032308 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 540 | 596 | 1.05E-15 | IPR011011 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 633 | 696 | 3.7E-9 | IPR011011 |
| SUPERFAMILY | SSF55729 | Acyl-CoA N-acyltransferases (Nat) | 790 | 881 | 6.6E-5 | IPR016181 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 538 | 626 | 7.3E-18 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 636 | 698 | 5.0E-12 | IPR013083 |
| SMART | SM00249 | PHD_3 | 551 | 592 | 2.7E-11 | IPR001965 |
| SMART | SM00249 | PHD_3 | 639 | 696 | 0.0017 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 549 | 594 | 10.4067 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 552 | 591 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 367 | 408 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 360 | 409 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G36720.1 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain. | 0 |
| RefSeq | XP_018850599.1 | uncharacterized protein LOC109013101 isoform X2 [Juglans regia] | 0 |
| Q6PDQ2 | Chromodomain-helicase-DNA-binding protein 4 OS=Mus musculus OX=10090 GN=Chd4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2I4H398 | uncharacterized protein LOC109013101 isoform X2 OS=Juglans regia OX=51240 GN=LOC109013101 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology