Basic Information
Locus ID:
Ceq02G1432
Species & Taxonomic ID:
Casuarina equisetifolia & 3523
Genome Assembly:
GCA_028551475.1
Description:
Raffinose synthase or seed imbibition protein Sip1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 13260322 | 13269505 | + | Ceq02G1432 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.08 | 102,044.86 Da | 37.79 | 83.14 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01866 | Rab2 | 735 | 890 | 2.5866E-115 | - |
| Pfam | PF00071 | Ras family | 736 | 888 | 2.0E-57 | IPR001806 |
| Pfam | PF05691 | Raffinose synthase or seed imbibition protein Sip1 | 232 | 707 | 1.0E-172 | IPR008811 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 736 | 898 | 2.33E-53 | IPR027417 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 233 | 533 | 5.72E-36 | IPR017853 |
| Gene3D | G3DSA:3.40.50.300 | - | 734 | 902 | 8.8E-65 | IPR027417 |
| SMART | SM00175 | rab_sub_5 | 735 | 890 | 2.9E-95 | - |
| SMART | SM00176 | ran_sub_2 | 735 | 931 | 3.5E-4 | - |
| SMART | SM00174 | rho_sub_3 | 734 | 890 | 7.4E-11 | IPR001806 |
| SMART | SM00173 | ras_sub_4 | 736 | 890 | 1.7E-31 | - |
| TIGRFAM | TIGR00231 | small_GTP: small GTP-binding protein domain | 736 | 880 | 6.2E-29 | IPR005225 |
| ProSiteProfiles | PS51419 | small GTPase Rab1 family profile. | 721 | 930 | 32.211773 | - |
| ProSiteProfiles | PS51420 | small GTPase Rho family profile. | 648 | 888 | 9.318924 | - |
| ProSiteProfiles | PS51421 | small GTPase Ras family profile. | 721 | 931 | 16.760489 | IPR001806 |
| PRINTS | PR00449 | Transforming protein P21 ras signature | 727 | 748 | 5.7E-30 | - |
| PRINTS | PR00449 | Transforming protein P21 ras signature | 750 | 766 | 5.7E-30 | - |
| PRINTS | PR00449 | Transforming protein P21 ras signature | 830 | 843 | 5.7E-30 | - |
| PRINTS | PR00449 | Transforming protein P21 ras signature | 768 | 790 | 5.7E-30 | - |
| PRINTS | PR00449 | Transforming protein P21 ras signature | 865 | 887 | 5.7E-30 | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G57520.1 | seed imbibition 2. | 0 |
| RefSeq | XP_050288183.1 | probable galactinol--sucrose galactosyltransferase 2 [Quercus robur] | 0 |
| Q94A08 | Probable galactinol--sucrose galactosyltransferase 2 OS=Arabidopsis thaliana OX=3702 GN=RFS2 PE=2 SV=2 | 0 | |
| TrEMBL | A0A835J780 | galactinol--sucrose galactosyltransferase OS=Salix dunnii OX=1413687 GN=SADUNF_Sadunf16G0005700 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology