Basic Information
Locus ID:
Ceq02G1302
Species & Taxonomic ID:
Casuarina equisetifolia & 3523
Genome Assembly:
GCA_028551475.1
Description:
Rhamnogalacturonate lyase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 11833930 | 11841240 | + | Ceq02G1302 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.62 | 79,379.45 Da | 29.16 | 79.51 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10320 | RGL4_N | 69 | 361 | 4.51561E-78 | - |
| CDD | cd10317 | RGL4_C | 505 | 692 | 1.44278E-54 | - |
| CDD | cd10316 | RGL4_M | 394 | 493 | 2.7896E-35 | IPR029413 |
| Pfam | PF06045 | Rhamnogalacturonate lyase family | 63 | 263 | 5.9E-82 | IPR010325 |
| Pfam | PF14686 | Polysaccharide lyase family 4, domain II | 417 | 488 | 6.3E-25 | IPR029413 |
| Pfam | PF14683 | Polysaccharide lyase family 4, domain III | 503 | 691 | 2.2E-54 | IPR029411 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 73 | 357 | 5.34E-8 | IPR011013 |
| SUPERFAMILY | SSF49452 | Starch-binding domain-like | 392 | 490 | 7.65E-10 | IPR013784 |
| SUPERFAMILY | SSF49785 | Galactose-binding domain-like | 501 | 692 | 3.4E-49 | IPR008979 |
| Gene3D | G3DSA:2.60.40.1120 | - | 391 | 490 | 1.4E-9 | - |
| Gene3D | G3DSA:2.60.120.260 | - | 501 | 692 | 2.0E-19 | - |
| Gene3D | G3DSA:2.70.98.10 | - | 69 | 359 | 3.2E-14 | IPR014718 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G22620.1 | Rhamnogalacturonate lyase family protein. | 0 |
| RefSeq | XP_041016447.1 | rhamnogalacturonate lyase-like [Juglans microcarpa x Juglans regia] | 0 |
| B8NCU7 | Probable rhamnogalacturonate lyase A OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / IAM 13836 / NRRL 3357 / JCM 12722 / SRRC 167) OX=332952 GN=rglA PE=3 SV=1 | 0 | |
| TrEMBL | A0A5N6QCA6 | rhamnogalacturonan endolyase OS=Carpinus fangiana OX=176857 GN=FH972_000598 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology