Basic Information
Locus ID:
Ceq02G1260
Species & Taxonomic ID:
Casuarina equisetifolia & 3523
Genome Assembly:
GCA_028551475.1
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 11378431 | 11384404 | - | Ceq02G1260 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.69 | 40,476.44 Da | 52.56 | 80.33 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 311 | 354 | 2.13176E-15 | - |
| Pfam | PF13947 | Wall-associated receptor kinase galacturonan-binding | 23 | 87 | 5.4E-17 | IPR025287 |
| Pfam | PF13639 | Ring finger domain | 311 | 354 | 7.3E-13 | IPR001841 |
| Pfam | PF14380 | Wall-associated receptor kinase C-terminal | 140 | 216 | 1.2E-7 | IPR032872 |
| SUPERFAMILY | SSF57850 | RING/U-box | 307 | 360 | 1.71E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 277 | 358 | 3.1E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 312 | 353 | 1.8E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 312 | 354 | 12.518784 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G46495.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_018818357.1 | putative RING-H2 finger protein ATL21A [Juglans regia] | 0 |
| P0CH01 | Putative RING-H2 finger protein ATL21A OS=Arabidopsis thaliana OX=3702 GN=ATL21A PE=3 SV=1 | 0 | |
| TrEMBL | A0A2N9E1C6 | RING-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS558 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology