Basic Information
Locus ID:
Ceq02G1138
Species & Taxonomic ID:
Casuarina equisetifolia & 3523
Genome Assembly:
GCA_028551475.1
Description:
E3 ubiquitin-protein ligase RING1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 10318497 | 10319643 | - | Ceq02G1138 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.57 | 40,898.19 Da | 62.62 | 66.18 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 184 | 225 | 3.61943E-24 | - |
| Pfam | PF06547 | Protein of unknown function (DUF1117) | 255 | 353 | 6.3E-35 | IPR010543 |
| Pfam | PF13639 | Ring finger domain | 183 | 225 | 3.2E-11 | IPR001841 |
| Pfam | PF14369 | zinc-ribbon | 5 | 35 | 1.1E-11 | IPR039525 |
| SUPERFAMILY | SSF57850 | RING/U-box | 165 | 231 | 3.31E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 148 | 232 | 9.0E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 184 | 224 | 2.8E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 184 | 225 | 12.164712 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 344 | 359 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 338 | 359 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G39720.1 | RING-H2 finger C2A. Encodes a putative RING-H2 finger protein RHC2a. | 0 |
| RefSeq | XP_015876849.2 | probable E3 ubiquitin-protein ligase RHC2A [Ziziphus jujuba var. spinosa] | 0 |
| O22283 | Probable E3 ubiquitin-protein ligase RHC2A OS=Arabidopsis thaliana OX=3702 GN=RHC2A PE=2 SV=1 | 0 | |
| TrEMBL | A0A5N6QC45 | RING-type E3 ubiquitin transferase OS=Carpinus fangiana OX=176857 GN=FH972_001448 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology