Basic Information
Locus ID:
Ceq02G1093
Species & Taxonomic ID:
Casuarina equisetifolia & 3523
Genome Assembly:
GCA_028551475.1
Description:
RING-H2 zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 9965981 | 9966902 | + | Ceq02G1093 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.89 | 20,033.91 Da | 38.70 | 101.88 | 0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 60 | 103 | 8.6E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 56 | 110 | 2.52E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 47 | 110 | 9.5E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 61 | 102 | 3.5E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 61 | 103 | 12.017182 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_035547967.1 | probable E3 ubiquitin-protein ligase ATL45 [Juglans regia] | 0 |
| TrEMBL | A0A6P9EZH1 | probable E3 ubiquitin-protein ligase ATL45 OS=Juglans regia OX=51240 GN=LOC118349012 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Anacardiaceae | Pistacia vera | 1 | pistato.v30120510 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G1093 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G1134 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0062s00026.v1.0 |
| Poaceae | Echinochloa crus-galli | 1 | CH01.3664 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_031833, gene-QYE76_031838 |