Basic Information
Locus ID:
Ceq02G0739
Species & Taxonomic ID:
Casuarina equisetifolia & 3523
Genome Assembly:
GCA_028551475.1
Description:
Pentatricopeptide repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 6700125 | 6710217 | + | Ceq02G0739 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.73 | 138,109.56 Da | 49.58 | 87.17 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd11393 | bHLH_AtbHLH_like | 191 | 239 | 1.85893E-15 | - |
| CDD | cd11286 | ADF_cofilin_like | 261 | 364 | 3.61802E-50 | IPR017904 |
| Pfam | PF13041 | PPR repeat family | 429 | 476 | 2.4E-13 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 632 | 661 | 6.5E-6 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 604 | 628 | 0.008 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 831 | 878 | 3.3E-7 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 733 | 762 | 1.1E-6 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 530 | 569 | 2.0E-7 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 907 | 927 | 1.0 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 1034 | 1081 | 6.9E-8 | IPR002885 |
| Pfam | PF00241 | Cofilin/tropomyosin-type actin-binding protein | 269 | 365 | 3.6E-26 | IPR002108 |
| Pfam | PF13041 | PPR repeat family | 933 | 977 | 3.8E-8 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 707 | 725 | 0.37 | IPR002885 |
| SUPERFAMILY | SSF55753 | Actin depolymerizing proteins | 254 | 364 | 3.57E-34 | - |
| SUPERFAMILY | SSF48452 | TPR-like | 417 | 959 | 3.44E-6 | IPR011990 |
| SUPERFAMILY | SSF47459 | HLH, helix-loop-helix DNA-binding domain | 194 | 257 | 1.57E-7 | IPR036638 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 788 | 884 | 1.5E-17 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 885 | 990 | 2.4E-16 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 647 | 787 | 8.9E-28 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 447 | 598 | 2.1E-30 | IPR011990 |
| Gene3D | G3DSA:3.40.20.10 | Severin | 256 | 378 | 7.3E-40 | IPR029006 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 1054 | 1230 | 6.8E-22 | IPR011990 |
| SMART | SM00102 | adf_2 | 267 | 389 | 2.5E-34 | IPR002108 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 1009 | 1034 | 9.1E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 433 | 465 | 4.9E-8 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 533 | 566 | 1.8E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 936 | 969 | 1.4E-7 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 733 | 765 | 3.2E-6 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 834 | 868 | 3.6E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 1037 | 1070 | 9.8E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 632 | 665 | 1.0E-4 | IPR002885 |
| ProSiteProfiles | PS50888 | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 183 | 232 | 10.188039 | IPR011598 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 630 | 664 | 10.39137 | IPR002885 |
| ProSiteProfiles | PS51263 | ADF-H domain profile. | 260 | 392 | 26.381901 | IPR002108 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 1035 | 1069 | 9.678885 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 531 | 565 | 11.366925 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 832 | 866 | 10.818861 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 934 | 968 | 11.191545 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 731 | 765 | 12.199985 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 430 | 464 | 12.353442 | IPR002885 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G39620.1 | Pentatricopeptide repeat (PPR) superfamily protein. | 0 |
| RefSeq | XP_018814417.1 | pentatricopeptide repeat-containing protein At2g39620 [Juglans regia] | 0 |
| O80647 | Pentatricopeptide repeat-containing protein At2g39620 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E33 PE=3 SV=1 | 0 | |
| TrEMBL | A0A5N6QF73 | DYW_deaminase domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_001509 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_24434 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah033616 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g037410 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg19889, Sbi_jg44652 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg17347 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00024039 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl63698, Sgl68200 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000021560, gene:ENSEOMG00000050726 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.2AG0009780 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30175040 |
| Apiaceae | Apium graveolens | 1 | Ag10G01116 |
| Arecaceae | Cocos nucifera | 1 | COCNU_04G000840 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_02.46.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G28911 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G39620.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10016248m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g21880.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g025470.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G0739 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno15g07690 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g02680 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G05287 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.1452, evm.TU.LG05.1977 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_4_RagTag.1706 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-26022 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-7668 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-4515, nbisL1-mrna-4516 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000008l.357 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-17549 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-9474 |
| Salicaceae | Populus euphratica | 1 | populus_peu06399 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132613496, gene-LOC132615578 |
| Solanaceae | Solanum chilense | 1 | SOLCI007470700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107015926 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.2306_chr01_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G0915 |
| Zosteraceae | Zostera marina | 1 | Zosma06g27790.v3.1 |