Basic Information
Locus ID:
Ceq02G0352
Species & Taxonomic ID:
Casuarina equisetifolia & 3523
Genome Assembly:
GCA_028551475.1
Description:
Topless-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 3068982 | 3079488 | - | Ceq02G0352 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.82 | 124,789.75 Da | 38.44 | 79.36 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 919 | 952 | 0.016 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 456 | 490 | 4.6E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 341 | 665 | 2.93E-41 | IPR036322 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 520 | 1097 | 7.06E-37 | IPR011047 |
| Gene3D | G3DSA:2.130.10.10 | - | 547 | 689 | 7.9E-13 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 775 | 1122 | 1.8E-30 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 330 | 546 | 2.7E-31 | IPR015943 |
| SMART | SM00320 | WD40_4 | 343 | 382 | 5.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 404 | 443 | 28.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 831 | 867 | 120.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 870 | 910 | 1.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 449 | 490 | 1.4E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 583 | 623 | 1.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1003 | 1043 | 2.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 913 | 952 | 4.4E-5 | IPR001680 |
| SMART | SM00668 | ctlh | 34 | 92 | 1.2E-15 | IPR006595 |
| SMART | SM00320 | WD40_4 | 493 | 534 | 0.033 | IPR001680 |
| SMART | SM00667 | Lish | 4 | 36 | 5.3E-5 | IPR006594 |
| SMART | SM00320 | WD40_4 | 537 | 580 | 30.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 456 | 499 | 10.775796 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 920 | 952 | 11.243651 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 601 | 632 | 8.770704 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 920 | 952 | 9.414692 | - |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 14.141059 | IPR006595 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 10.24683 | IPR006594 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1111 | 1133 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 286 | 306 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1102 | 1133 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80490.2 | TOPLESS-related 1. | 0 |
| RefSeq | XP_023906381.1 | protein TOPLESS isoform X2 [Quercus suber] | 0 |
| Q0WV90 | Topless-related protein 1 OS=Arabidopsis thaliana OX=3702 GN=TPR1 PE=1 SV=3 | 0 | |
| TrEMBL | A0A5N6QDB1 | TOPLESS OS=Carpinus fangiana OX=176857 GN=FH972_001935 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology