Basic Information
Locus ID:
Ceq02G0325
Species & Taxonomic ID:
Casuarina equisetifolia & 3523
Genome Assembly:
GCA_028551475.1
Description:
Topless-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 2814040 | 2827154 | - | Ceq02G0325 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.21 | 122,085.27 Da | 41.92 | 84.00 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 431 | 465 | 0.0018 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 894 | 928 | 0.034 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 326 | 651 | 2.02E-38 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 815 | 1074 | 4.39E-35 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 816 | 1082 | 7.8E-27 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 523 | 667 | 3.8E-9 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 293 | 521 | 2.3E-27 | IPR015943 |
| SMART | SM00320 | WD40_4 | 980 | 1021 | 43.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 512 | 555 | 43.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 557 | 598 | 23.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 889 | 928 | 9.7E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 846 | 886 | 12.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 319 | 358 | 2.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 806 | 843 | 23.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 379 | 419 | 6.7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 424 | 465 | 3.0E-4 | IPR001680 |
| SMART | SM00667 | Lish | 4 | 36 | 0.0015 | IPR006594 |
| SMART | SM00668 | ctlh | 34 | 92 | 2.8E-13 | IPR006595 |
| SMART | SM00320 | WD40_4 | 468 | 509 | 0.05 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 896 | 937 | 11.611251 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 9.586046 | IPR006594 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 13.198306 | IPR006595 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 431 | 469 | 8.623787 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 431 | 474 | 11.07656 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 896 | 930 | 9.599237 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 452 | 466 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1089 | 1106 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1082 | 1106 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15880.1 | WUS-interacting protein 2. | 0 |
| RefSeq | XP_028062905.1 | topless-related protein 4-like isoform X2 [Camellia sinensis] | 0 |
| Q27GK7 | Topless-related protein 4 OS=Arabidopsis thaliana OX=3702 GN=TPR4 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5N6QGJ4 | Topless-related protein 4-like OS=Carpinus fangiana OX=176857 GN=FH972_001958 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology