Basic Information
Locus ID:
Ceq01G2447
Species & Taxonomic ID:
Casuarina equisetifolia & 3523
Genome Assembly:
GCA_028551475.1
Description:
May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 32722271 | 32732321 | + | Ceq01G2447 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.67 | 113,737.82 Da | 43.45 | 77.88 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 2 | 246 | 6.62758E-57 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 126 | 164 | 4.9E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 86 | 122 | 2.1E-9 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 45 | 80 | 7.1E-8 | IPR001680 |
| Pfam | PF13925 | con80 domain of Katanin | 846 | 1015 | 2.4E-46 | IPR028021 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 2 | 247 | 4.45E-60 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 1 | 122 | 3.0E-36 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 123 | 304 | 3.0E-24 | IPR015943 |
| SMART | SM00320 | WD40_4 | 125 | 164 | 1.9E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1 | 35 | 17.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 41 | 80 | 7.4E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 167 | 205 | 0.087 | IPR001680 |
| SMART | SM00320 | WD40_4 | 83 | 122 | 1.6E-11 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 48 | 89 | 15.487762 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 132 | 173 | 14.719144 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 90 | 131 | 17.426018 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 48 | 82 | 12.182859 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 132 | 167 | 11.708317 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 3 | 44 | 12.212779 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 90 | 127 | 13.47467 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 3 | 37 | 10.021053 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 151 | 165 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 109 | 123 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 151 | 165 | 3.3E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 67 | 81 | 3.3E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 109 | 123 | 3.3E-7 | IPR020472 |
| Hamap | MF_03022 | Katanin p80 WD40 repeat-containing subunit B1 [KATNB1]. | 1 | 1018 | 16.081524 | IPR026962 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 441 | 477 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 812 | 834 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 579 | 593 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 378 | 392 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 445 | 466 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 373 | 397 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 572 | 593 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G61210.3 | - | 0 |
| RefSeq | XP_050286827.1 | katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.1-like isoform X2 [Quercus robur] | 0 |
| F4HTH8 | Katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.2 OS=Arabidopsis thaliana OX=3702 GN=KTN80.2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7N2LNC6 | Katanin p80 WD40 repeat-containing subunit B1 homolog OS=Quercus lobata OX=97700 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology