Basic Information
Locus ID:
Ceq01G2417
Species & Taxonomic ID:
Casuarina equisetifolia & 3523
Genome Assembly:
GCA_028551475.1
Description:
SNF2 family N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 32458097 | 32467450 | - | Ceq01G2417 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.07 | 143,169.92 Da | 48.96 | 75.98 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18008 | DEXDc_SHPRH-like | 550 | 874 | 1.29245E-85 | - |
| CDD | cd18793 | SF2_C_SNF | 1146 | 1256 | 3.666E-53 | - |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 990 | 1026 | 2.3E-6 | IPR018957 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 1146 | 1246 | 4.4E-16 | IPR001650 |
| Pfam | PF00176 | SNF2 family N-terminal domain | 571 | 951 | 1.6E-69 | IPR000330 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 535 | 874 | 1.38E-43 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 882 | 1303 | 7.44E-56 | IPR027417 |
| SUPERFAMILY | SSF57850 | RING/U-box | 987 | 1034 | 1.37E-11 | - |
| Gene3D | G3DSA:3.40.50.10810 | - | 731 | 887 | 6.9E-30 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 639 | 730 | 5.1E-11 | IPR038718 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 974 | 1041 | 2.4E-10 | IPR013083 |
| Gene3D | G3DSA:3.40.50.300 | - | 889 | 1304 | 4.7E-62 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 521 | 614 | 1.3E-10 | IPR038718 |
| SMART | SM00184 | ring_2 | 990 | 1028 | 8.1E-4 | IPR001841 |
| SMART | SM00490 | helicmild6 | 1163 | 1246 | 7.9E-18 | IPR001650 |
| SMART | SM00487 | ultradead3 | 546 | 851 | 7.2E-27 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 1140 | 1299 | 14.691626 | IPR001650 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 990 | 1026 | 10.586141 | IPR001841 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 565 | 836 | 12.13752 | IPR014001 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 1005 | 1014 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 39 | 62 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 723 | 760 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 723 | 744 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 47 | 62 | - | - |
Gene Ontology
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G61140.1 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_041026547.1 | helicase-like transcription factor CHR28 [Juglans microcarpa x Juglans regia] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5N6QBP2 | Helicase-like transcription factor CHR28 OS=Carpinus fangiana OX=176857 GN=FH972_000389 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology