Basic Information
Locus ID:
Ceq01G2296
Species & Taxonomic ID:
Casuarina equisetifolia & 3523
Genome Assembly:
GCA_028551475.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 30854289 | 30858352 | + | Ceq01G2296 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.36 | 47,893.84 Da | 48.13 | 69.64 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 132 | 182 | 5.13361E-27 | - |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 134 | 180 | 4.9E-8 | IPR018957 |
| SUPERFAMILY | SSF57850 | RING/U-box | 130 | 193 | 1.44E-15 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 118 | 194 | 1.2E-16 | IPR013083 |
| SMART | SM00184 | ring_2 | 134 | 180 | 1.7E-9 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 134 | 181 | 12.754832 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 149 | 158 | - | IPR017907 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G27470.1 | RING membrane-anchor 3. Encodes a RING finger E3 ubiquitin ligase. | 0 |
| RefSeq | XP_041026576.1 | E3 ubiquitin-protein ligase RMA1H1-like isoform X1 [Juglans microcarpa x Juglans regia] | 0 |
| Q6R567 | E3 ubiquitin-protein ligase RMA1H1 OS=Capsicum annuum OX=4072 GN=RMA1H1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1B1LZW2 | RING-type E3 ubiquitin transferase OS=Betula platyphylla OX=78630 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology