Basic Information
Locus ID:
Ceq01G2096
Species & Taxonomic ID:
Casuarina equisetifolia & 3523
Genome Assembly:
GCA_028551475.1
Description:
Belongs to the SKP1 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 28451306 | 28451749 | + | Ceq01G2096 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.46 | 15,797.50 Da | 32.86 | 82.56 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01466 | Skp1 family, dimerisation domain | 90 | 130 | 4.2E-16 | IPR016072 |
| SUPERFAMILY | SSF81382 | Skp1 dimerisation domain-like | 56 | 129 | 1.57E-16 | IPR036296 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 1 | 133 | 3.4E-33 | IPR011333 |
| PIRSF | PIRSF028729 | SCF_Skp | 1 | 133 | 6.3E-29 | IPR016897 |
Gene Ontology
Biological Process:
KEGG Pathway
Pathway:
ko04110 (Cell cycle)
map04110 (Cell cycle)
ko04111 (Cell cycle - yeast)
map04111 (Cell cycle - yeast)
ko04114 (Oocyte meiosis)
map04114 (Oocyte meiosis)
ko04120 (Ubiquitin mediated proteolysis)
map04120 (Ubiquitin mediated proteolysis)
ko04141 (Protein processing in endoplasmic reticulum)
map04141 (Protein processing in endoplasmic reticulum)
ko04310 (Wnt signaling pathway)
map04310 (Wnt signaling pathway)
ko04341 (Hedgehog signaling pathway - fly)
map04341 (Hedgehog signaling pathway - fly)
ko04350 (TGF-beta signaling pathway)
map04350 (TGF-beta signaling pathway)
ko04710 (Circadian rhythm)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G20140.1 | SKP1-like 4. | 0 |
| RefSeq | XP_050278923.1 | SKP1-like protein 20 [Quercus robur] | 0 |
| Q651E8 | SKP1-like protein 20 OS=Oryza sativa subsp. japonica OX=39947 GN=SKP20 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6A1W270 | SKP1-like protein OS=Morella rubra OX=262757 GN=CJ030_MR4G016087 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Anacardiaceae | Pistacia vera | 2 | pistato.v30188250, pistato.v30188360 |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq01G1697, Ceq01G2096 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G2295 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g03070 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.2949 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_18_RagTag.285, evm.TU.Scaffold_5_RagTag.39 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-10433 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-10441, nbisL1-mrna-9209 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-10718, nbisL1-mrna-7776 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000006l.5, add.evm.TU.utg000023l.119 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00013746 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-20457 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-17179, nbisL1-mrna-6866 |
| Salicaceae | Populus euphratica | 2 | populus_peu13958, populus_peu26353 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_1128 |