Basic Information
Locus ID:
Ceq01G2026
Species & Taxonomic ID:
Casuarina equisetifolia & 3523
Genome Assembly:
GCA_028551475.1
Description:
MADS-box transcription factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 27770843 | 27774480 | - | Ceq01G2026 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.32 | 27,007.74 Da | 66.83 | 78.30 | -0.80 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00265 | MADS_MEF2_like | 21 | 89 | 2.30119E-38 | IPR033896 |
| Pfam | PF00319 | SRF-type transcription factor (DNA-binding and dimerisation domain) | 29 | 76 | 3.9E-25 | IPR002100 |
| Pfam | PF01486 | K-box region | 105 | 189 | 2.5E-21 | IPR002487 |
| SUPERFAMILY | SSF55455 | SRF-like | 21 | 101 | 1.22E-30 | IPR036879 |
| Gene3D | G3DSA:3.40.1810.10 | - | 33 | 93 | 2.3E-26 | IPR036879 |
| SMART | SM00432 | madsneu2 | 20 | 79 | 3.2E-39 | IPR002100 |
| ProSiteProfiles | PS50066 | MADS-box domain profile. | 20 | 80 | 31.244343 | IPR002100 |
| ProSiteProfiles | PS51297 | K-box domain profile. | 105 | 195 | 13.308954 | IPR002487 |
| ProSitePatterns | PS00350 | MADS-box domain signature. | 22 | 76 | - | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 57 | 78 | 7.9E-29 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 42 | 57 | 7.9E-29 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 22 | 42 | 7.9E-29 | IPR002100 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 200 | 218 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 195 | 218 | - | - |
| Coils | Coil | Coil | 105 | 132 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G26310.1 | K-box region and MADS-box transcription factor family protein . Floral homeotic gene encoding a MADS domain protein homologous to AP1. Enhances the flower to shoot transformation in ap1 mutants. | 0 |
| RefSeq | XP_040988074.1 | truncated transcription factor CAULIFLOWER A-like isoform X2 [Juglans microcarpa x Juglans regia] | 0 |
| I1GN76 | Protein VERNALIZATION 1 OS=Brachypodium distachyon OX=15368 GN=VRN1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A097C262 | MADS-like protein OS=Carya cathayensis OX=139927 GN=TM PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology