Basic Information
Locus ID:
Ceq01G1939
Species & Taxonomic ID:
Casuarina equisetifolia & 3523
Genome Assembly:
GCA_028551475.1
Description:
Lysosomal
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 27019339 | 27029004 | + | Ceq01G1939 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.48 | 110,882.29 Da | 38.63 | 85.45 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10810 | GH38N_AMII_LAM_like | 37 | 296 | 9.34359E-168 | - |
| Pfam | PF09261 | Alpha mannosidase middle domain | 337 | 427 | 3.5E-21 | IPR015341 |
| Pfam | PF07748 | Glycosyl hydrolases family 38 C-terminal domain | 574 | 787 | 2.6E-48 | IPR011682 |
| Pfam | PF01074 | Glycosyl hydrolases family 38 N-terminal domain | 38 | 332 | 3.7E-79 | IPR000602 |
| Pfam | PF17677 | Glycosyl hydrolases family 38 C-terminal beta sandwich domain | 869 | 974 | 5.7E-9 | IPR041147 |
| SUPERFAMILY | SSF88713 | Glycoside hydrolase/deacetylase | 26 | 334 | 1.56E-97 | IPR011330 |
| SUPERFAMILY | SSF88688 | Families 57/38 glycoside transferase middle domain | 336 | 428 | 1.57E-28 | IPR028995 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 434 | 978 | 4.71E-140 | IPR011013 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 379 | 435 | 4.2E-22 | IPR037094 |
| Gene3D | G3DSA:2.60.40.1360 | - | 855 | 981 | 5.7E-34 | - |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 301 | 378 | 5.0E-29 | IPR037094 |
| Gene3D | G3DSA:2.70.98.30 | - | 571 | 835 | 2.8E-92 | - |
| Gene3D | G3DSA:2.60.40.1180 | - | 446 | 570 | 5.3E-26 | IPR013780 |
| Gene3D | G3DSA:3.20.110.10 | Glycoside hydrolase 38, N terminal domain | 37 | 300 | 5.2E-104 | IPR027291 |
| SMART | SM00872 | Alpha_mann_mid_2 | 337 | 411 | 2.4E-24 | IPR015341 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G13980.1 | Glycosyl hydrolase family 38 protein. | 0 |
| RefSeq | XP_030940373.1 | probable alpha-mannosidase At5g13980 isoform X2 [Quercus lobata] | 0 |
| Q8LPJ3 | Probable alpha-mannosidase At5g13980 OS=Arabidopsis thaliana OX=3702 GN=At5g13980 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7N2MPK4 | Alpha-mannosidase OS=Quercus lobata OX=97700 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology