Basic Information
Locus ID:
Ceq01G1913
Species & Taxonomic ID:
Casuarina equisetifolia & 3523
Genome Assembly:
GCA_028551475.1
Description:
Belongs to the histone deacetylase family. HD Type 1 subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 26818220 | 26822004 | + | Ceq01G1913 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.22 | 51,726.30 Da | 41.43 | 71.22 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09991 | HDAC_classI | 23 | 330 | 0.0 | - |
| Pfam | PF00850 | Histone deacetylase domain | 37 | 328 | 1.9E-85 | IPR023801 |
| SUPERFAMILY | SSF52768 | Arginase/deacetylase | 18 | 383 | 5.28E-124 | IPR023696 |
| Gene3D | G3DSA:3.40.800.20 | Histone deacetylase domain | 16 | 391 | 7.8E-136 | IPR037138 |
| PIRSF | PIRSF037913 | HDAC_I_euk | 3 | 459 | 2.0E-205 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 105 | 122 | 2.4E-59 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 167 | 183 | 2.4E-59 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 39 | 56 | 2.4E-59 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 126 | 146 | 2.4E-59 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 72 | 90 | 2.4E-59 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 243 | 261 | 2.4E-59 | IPR003084 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 148 | 171 | 1.9E-24 | IPR000286 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 265 | 275 | 1.9E-24 | IPR000286 |
| PRINTS | PR01271 | Histone deacetylase signature | 226 | 239 | 2.4E-59 | IPR003084 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 180 | 195 | 1.9E-24 | IPR000286 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 387 | 401 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 384 | 460 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 427 | 442 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G63110.1 | histone deacetylase 6. RPD3-like histone deacetylase. HDA6 mutations specifically increase the expression of auxin-responsive transgenes, suggesting a role in transgene silencing. | 0 |
| RefSeq | XP_018837700.1 | histone deacetylase 6-like [Juglans regia] | 0 |
| Q9FML2 | Histone deacetylase 6 OS=Arabidopsis thaliana OX=3702 GN=HDA6 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5N6RPJ0 | Histone deacetylase OS=Carpinus fangiana OX=176857 GN=FH972_019197 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology