Basic Information
Locus ID:
Ceq01G1865
Species & Taxonomic ID:
Casuarina equisetifolia & 3523
Genome Assembly:
GCA_028551475.1
Description:
Raffinose synthase or seed imbibition protein Sip1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 26411467 | 26423999 | - | Ceq01G1865 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.88 | 240,339.05 Da | 37.48 | 83.79 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01535 | PPR repeat | 153 | 175 | 0.028 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 214 | 243 | 3.3E-5 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 349 | 372 | 1.1 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 454 | 473 | 0.51 | IPR002885 |
| Pfam | PF05691 | Raffinose synthase or seed imbibition protein Sip1 | 1425 | 1885 | 1.7E-146 | IPR008811 |
| Pfam | PF05691 | Raffinose synthase or seed imbibition protein Sip1 | 635 | 1309 | 4.9E-254 | IPR008811 |
| Pfam | PF05691 | Raffinose synthase or seed imbibition protein Sip1 | 1917 | 2139 | 3.8E-72 | IPR008811 |
| Pfam | PF01535 | PPR repeat | 516 | 544 | 0.48 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 245 | 273 | 2.6E-5 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 375 | 422 | 3.7E-8 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 275 | 319 | 1.3E-10 | IPR002885 |
| SUPERFAMILY | SSF48452 | TPR-like | 274 | 535 | 2.69E-6 | IPR011990 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 773 | 1096 | 7.37E-48 | IPR017853 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 1591 | 1884 | 2.11E-40 | IPR017853 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 7 | 148 | 5.4E-10 | IPR011990 |
| Gene3D | G3DSA:3.20.20.70 | Aldolase class I | 1591 | 1897 | 1.7E-10 | IPR013785 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 353 | 577 | 1.0E-34 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 151 | 273 | 1.1E-29 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 274 | 352 | 2.0E-15 | IPR011990 |
| Gene3D | G3DSA:3.20.20.70 | Aldolase class I | 774 | 1096 | 1.9E-10 | IPR013785 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 377 | 410 | 1.9E-6 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 214 | 242 | 7.1E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 413 | 447 | 0.0011 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 245 | 276 | 4.8E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 276 | 310 | 3.0E-8 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 375 | 409 | 11.432693 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 180 | 211 | 8.604678 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 274 | 308 | 12.309597 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 77 | 112 | 9.558311 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 212 | 246 | 10.950397 | IPR002885 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G57520.1 | seed imbibition 2. | 0 |
| RefSeq | XP_023894209.1 | probable galactinol--sucrose galactosyltransferase 2 [Quercus suber] | 0 |
| Q94A08 | Probable galactinol--sucrose galactosyltransferase 2 OS=Arabidopsis thaliana OX=3702 GN=RFS2 PE=2 SV=2 | 0 | |
| TrEMBL | A0A6A4LCJ0 | galactinol--sucrose galactosyltransferase (Fragment) OS=Rhododendron williamsianum OX=262921 GN=C3L33_14389 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology