Basic Information
Locus ID:
Ceq01G1673
Species & Taxonomic ID:
Casuarina equisetifolia & 3523
Genome Assembly:
GCA_028551475.1
Description:
Encoded by
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 24503623 | 24506939 | - | Ceq01G1673 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.33 | 51,132.95 Da | 57.89 | 89.98 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF17123 | RING-like zinc finger | 184 | 212 | 4.7E-8 | IPR001841 |
| Pfam | PF13639 | Ring finger domain | 402 | 445 | 1.2E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 386 | 450 | 2.4E-18 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 167 | 214 | 2.65E-9 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 149 | 218 | 6.9E-11 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 368 | 451 | 2.4E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 185 | 223 | 0.057 | IPR001841 |
| SMART | SM00184 | ring_2 | 404 | 444 | 3.7E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 404 | 445 | 12.076194 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 28 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G18770.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_040990682.1 | RING-H2 finger protein ATL7-like [Juglans microcarpa x Juglans regia] | 0 |
| Q9VHI7 | E3 ubiquitin-protein ligase Iruka OS=Drosophila melanogaster OX=7227 GN=Iru PE=1 SV=1 | 0 | |
| TrEMBL | A0A5N6R0F2 | RING-type domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_008015 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Casuarinaceae | Casuarina equisetifolia | 5 | Ceq01G1673, Ceq01G1674, Ceq02G2197, Ceq02G2208, Ceq09G0347 |
| Casuarinaceae | Casuarina glauca | 4 | Cgl01G1832, Cgl01G1833, Cgl01G1834, Cgl01G2060 |