Basic Information
Locus ID:
Ceq01G1598
Species & Taxonomic ID:
Casuarina equisetifolia & 3523
Genome Assembly:
GCA_028551475.1
Description:
DNA repair protein recA homolog 1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 23614742 | 23624622 | + | Ceq01G1598 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.22 | 51,880.84 Da | 34.60 | 84.00 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00983 | recA | 123 | 448 | 0.0 | IPR013765 |
| Pfam | PF00154 | recA bacterial DNA recombination protein | 126 | 387 | 1.3E-117 | IPR013765 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 124 | 387 | 1.27E-53 | IPR027417 |
| SUPERFAMILY | SSF54752 | RecA protein, C-terminal domain | 389 | 445 | 1.05E-17 | IPR023400 |
| Gene3D | G3DSA:3.40.50.300 | - | 146 | 387 | 1.1E-78 | IPR027417 |
| Gene3D | G3DSA:3.30.250.10 | - | 389 | 447 | 2.8E-21 | - |
| SMART | SM00382 | AAA_5 | 175 | 346 | 6.5E-9 | IPR003593 |
| TIGRFAM | TIGR02012 | tigrfam_recA: protein RecA | 123 | 443 | 1.6E-143 | IPR013765 |
| ProSiteProfiles | PS50162 | RecA family profile 1. | 154 | 312 | 28.809511 | IPR020588 |
| ProSiteProfiles | PS50163 | RecA family profile 2. | 317 | 392 | 27.862307 | IPR020587 |
| ProSitePatterns | PS00321 | recA signature. | 331 | 339 | - | IPR020584 |
| PRINTS | PR00142 | RecA protein signature | 363 | 392 | 9.1E-75 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 417 | 434 | 9.1E-75 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 283 | 312 | 9.1E-75 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 245 | 274 | 9.1E-75 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 328 | 356 | 9.1E-75 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 211 | 240 | 9.1E-75 | IPR013765 |
| Hamap | MF_00268 | Protein RecA [recA]. | 124 | 449 | 44.996338 | IPR013765 |
Gene Ontology
Biological Process:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G79050.1 | recA DNA recombination family protein. | 0 |
| RefSeq | XP_042948709.1 | DNA repair protein recA homolog 1, chloroplastic isoform X1 [Carya illinoinensis] | 0 |
| Q39199 | DNA repair protein recA homolog 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RECA PE=2 SV=1 | 0 | |
| TrEMBL | A0A2I4F626 | DNA repair protein recA homolog 1, chloroplastic isoform X1 OS=Juglans regia OX=51240 GN=LOC108995892 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology