Basic Information
Locus ID:
Ceq01G1573
Species & Taxonomic ID:
Casuarina equisetifolia & 3523
Genome Assembly:
GCA_028551475.1
Description:
High mobility group B protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 23399071 | 23403286 | + | Ceq01G1573 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.40 | 37,008.28 Da | 36.77 | 72.72 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16872 | ARID_HMGB9-like | 61 | 146 | 7.96543E-50 | - |
| CDD | cd01390 | HMGB-UBF_HMG-box | 252 | 315 | 3.20988E-19 | - |
| Pfam | PF00505 | HMG (high mobility group) box | 252 | 319 | 2.8E-11 | IPR009071 |
| Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 63 | 146 | 6.4E-17 | IPR001606 |
| SUPERFAMILY | SSF47095 | HMG-box | 239 | 323 | 1.44E-18 | IPR036910 |
| SUPERFAMILY | SSF46774 | ARID-like | 57 | 158 | 1.7E-29 | IPR036431 |
| Gene3D | G3DSA:1.10.30.10 | High mobility group box domain | 235 | 326 | 1.5E-17 | IPR036910 |
| Gene3D | G3DSA:1.10.150.60 | - | 51 | 163 | 1.9E-28 | IPR036431 |
| SMART | SM01014 | ARID_2 | 56 | 146 | 1.3E-28 | - |
| SMART | SM00398 | hmgende2 | 251 | 320 | 1.4E-12 | IPR009071 |
| SMART | SM00501 | bright_3 | 60 | 151 | 2.0E-34 | IPR001606 |
| ProSiteProfiles | PS51011 | ARID domain profile. | 59 | 150 | 25.901945 | IPR001606 |
| ProSiteProfiles | PS50118 | HMG boxes A and B DNA-binding domains profile. | 252 | 319 | 13.402176 | IPR009071 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 229 | 252 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13350.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_023886291.1 | high mobility group B protein 10-like [Quercus suber] | 0 |
| Q9LTT3 | High mobility group B protein 10 OS=Arabidopsis thaliana OX=3702 GN=HMGB10 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5N6RKS7 | High mobility group B protein 10 OS=Carpinus fangiana OX=176857 GN=FH972_016960 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology