Basic Information
Locus ID:
Ceq01G1534
Species & Taxonomic ID:
Casuarina equisetifolia & 3523
Genome Assembly:
GCA_028551475.1
Description:
zinc finger CCCH domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 22920550 | 22925953 | - | Ceq01G1534 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.89 | 50,626.87 Da | 33.27 | 78.67 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 189 | 222 | 0.0022 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 315 | 348 | 9.4E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 353 | 387 | 0.2 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 182 | 401 | 2.88E-30 | IPR036322 |
| SUPERFAMILY | SSF90229 | CCCH zinc finger | 153 | 177 | 2.98E-5 | IPR036855 |
| Gene3D | G3DSA:3.30.1370.210 | - | 120 | 178 | 6.2E-6 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 303 | 418 | 3.7E-17 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 179 | 290 | 3.4E-12 | IPR015943 |
| SMART | SM00356 | c3hfinal6 | 39 | 62 | 0.0028 | IPR000571 |
| SMART | SM00320 | WD40_4 | 310 | 348 | 2.8E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 183 | 222 | 1.3E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 351 | 388 | 0.14 | IPR001680 |
| SMART | SM00356 | c3hfinal6 | 154 | 178 | 2.2E-4 | IPR000571 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 317 | 348 | 8.65015 | - |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 152 | 179 | 13.337781 | IPR000571 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 190 | 222 | 11.611251 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 317 | 357 | 11.009724 | IPR001680 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 37 | 63 | 12.267424 | IPR000571 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 190 | 222 | 9.704691 | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G25440.1 | zinc finger WD40 repeat protein 1. | 0 |
| RefSeq | XP_030965983.1 | zinc finger CCCH domain-containing protein 17-like [Quercus lobata] | 0 |
| Q0DYP5 | Zinc finger CCCH domain-containing protein 17 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0677700 PE=2 SV=2 | 0 | |
| TrEMBL | A0A7N2R3M9 | Zinc finger CCCH domain-containing protein 48-like OS=Quercus lobata OX=97700 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology