Basic Information
Locus ID:
Ceq01G1446
Species & Taxonomic ID:
Casuarina equisetifolia & 3523
Genome Assembly:
GCA_028551475.1
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 22220861 | 22227346 | - | Ceq01G1446 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.33 | 167,908.70 Da | 36.45 | 102.70 | 0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03250 | ABCC_MRP_domain1 | 625 | 825 | 9.73747E-111 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 936 | 1230 | 5.12419E-89 | IPR044726 |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 312 | 599 | 6.88131E-107 | IPR044746 |
| CDD | cd03244 | ABCC_MRP_domain2 | 1253 | 1473 | 9.4851E-122 | - |
| Pfam | PF00005 | ABC transporter | 1273 | 1420 | 4.9E-30 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 311 | 578 | 2.9E-25 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 940 | 1182 | 1.1E-28 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 643 | 777 | 1.4E-20 | IPR003439 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 304 | 609 | 6.02E-34 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 625 | 847 | 3.22E-55 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 936 | 1236 | 8.37E-51 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1247 | 1486 | 1.28E-65 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 899 | 1236 | 2.4E-61 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 1238 | 1491 | 1.0E-79 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 289 | 606 | 9.3E-49 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 607 | 864 | 2.5E-74 | IPR027417 |
| SMART | SM00382 | AAA_5 | 1281 | 1466 | 4.0E-13 | IPR003593 |
| SMART | SM00382 | AAA_5 | 652 | 825 | 1.9E-10 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 311 | 591 | 32.920841 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1257 | 1489 | 18.607571 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 938 | 1218 | 34.938225 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 625 | 848 | 22.349049 | IPR003439 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 750 | 764 | - | IPR017871 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_018812887.2 | ABC transporter C family member 3 [Juglans regia] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2I4E0G7 | ABC-type xenobiotic transporter OS=Juglans regia OX=51240 GN=LOC108985153 PE=3 SV=2 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology