Basic Information
Locus ID:
Ceq01G1445
Species & Taxonomic ID:
Casuarina equisetifolia & 3523
Genome Assembly:
GCA_028551475.1
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 22198606 | 22216213 | - | Ceq01G1445 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.89 | 199,907.45 Da | 37.25 | 104.03 | 0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 907 | 1201 | 1.98238E-88 | IPR044726 |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 284 | 571 | 2.00727E-106 | IPR044746 |
| CDD | cd03250 | ABCC_MRP_domain1 | 597 | 797 | 5.97909E-109 | - |
| CDD | cd03244 | ABCC_MRP_domain2 | 1224 | 1444 | 2.68373E-122 | - |
| Pfam | PF00005 | ABC transporter | 615 | 749 | 1.8E-20 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 1244 | 1391 | 5.5E-30 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 283 | 550 | 5.3E-25 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 911 | 1153 | 3.5E-27 | IPR011527 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 276 | 581 | 2.22E-33 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1218 | 1451 | 1.45E-65 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 597 | 819 | 4.05E-56 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1468 | 1673 | 4.35E-6 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1627 | 1683 | 3.63E-8 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 907 | 1207 | 6.67E-50 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 1209 | 1464 | 7.3E-80 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 872 | 1207 | 6.8E-60 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 579 | 841 | 3.8E-75 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1518 | 1697 | 5.3E-14 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 261 | 578 | 3.4E-48 | IPR036640 |
| SMART | SM00382 | AAA_5 | 1252 | 1437 | 6.0E-13 | IPR003593 |
| SMART | SM00382 | AAA_5 | 624 | 797 | 4.6E-12 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 283 | 563 | 31.770494 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 909 | 1189 | 33.919075 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 597 | 820 | 22.489103 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1228 | 1460 | 18.394154 | IPR003439 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 722 | 736 | - | IPR017871 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_040987171.1 | ABC transporter C family member 3-like isoform X4 [Juglans microcarpa x Juglans regia] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2I4E0G7 | ABC-type xenobiotic transporter OS=Juglans regia OX=51240 GN=LOC108985153 PE=3 SV=2 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology