Basic Information
Locus ID:
Ceq01G1037
Species & Taxonomic ID:
Casuarina equisetifolia & 3523
Genome Assembly:
GCA_028551475.1
Description:
zinc finger CCCH domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 18019516 | 18024340 | + | Ceq01G1037 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.46 | 53,402.87 Da | 31.26 | 77.78 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 350 | 384 | 6.2E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 187 | 222 | 0.0026 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 312 | 345 | 1.4E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 184 | 476 | 8.55E-42 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 307 | 481 | 1.6E-22 | IPR015943 |
| Gene3D | G3DSA:4.10.1000.10 | - | 34 | 89 | 1.8E-5 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 174 | 306 | 7.5E-14 | IPR015943 |
| SMART | SM00320 | WD40_4 | 435 | 472 | 71.0 | IPR001680 |
| SMART | SM00356 | c3hfinal6 | 40 | 63 | 0.0033 | IPR000571 |
| SMART | SM00320 | WD40_4 | 183 | 222 | 1.9E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 348 | 385 | 3.7E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 307 | 345 | 1.7E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 391 | 432 | 55.0 | IPR001680 |
| SMART | SM00356 | c3hfinal6 | 154 | 178 | 0.073 | IPR000571 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 314 | 345 | 8.597424 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 314 | 354 | 10.942887 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 190 | 222 | 11.64467 | IPR001680 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 38 | 64 | 12.558486 | IPR000571 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 152 | 179 | 11.985751 | IPR000571 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 190 | 222 | 9.731054 | - |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 209 | 223 | 2.1E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 332 | 346 | 2.1E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 372 | 386 | 2.1E-5 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G25440.1 | zinc finger WD40 repeat protein 1. | 0 |
| RefSeq | XP_030965983.1 | zinc finger CCCH domain-containing protein 17-like [Quercus lobata] | 0 |
| Q0DYP5 | Zinc finger CCCH domain-containing protein 17 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0677700 PE=2 SV=2 | 0 | |
| TrEMBL | A0A7N2R3M9 | Zinc finger CCCH domain-containing protein 48-like OS=Quercus lobata OX=97700 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology