Basic Information
Locus ID:
Ceq01G0781
Species & Taxonomic ID:
Casuarina equisetifolia & 3523
Genome Assembly:
GCA_028551475.1
Description:
Vacuolar protein sorting-associated protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 12808061 | 12859598 | - | Ceq01G0781 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.73 | 490,753.34 Da | 45.52 | 89.10 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 2072 | 2177 | 5.6E-6 | IPR009291 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 2246 | 2393 | 3.6E-10 | IPR009291 |
| Pfam | PF16908 | Vacuolar sorting-associated protein 13, N-terminal | 133 | 374 | 8.2E-67 | IPR031646 |
| Pfam | PF12624 | N-terminal region of Chorein or VPS13 | 2 | 107 | 3.7E-30 | IPR026854 |
| Pfam | PF16910 | Repeating coiled region of VPS13 | 548 | 748 | 1.0E-26 | IPR031642 |
| Pfam | PF00169 | PH domain | 768 | 876 | 2.2E-10 | IPR001849 |
| Pfam | PF06650 | SHR-binding domain of vacuolar-sorting associated protein 13 | 3358 | 3527 | 1.9E-9 | IPR009543 |
| SUPERFAMILY | SSF50729 | PH domain-like | 764 | 881 | 5.88E-12 | - |
| Gene3D | G3DSA:2.30.29.30 | - | 761 | 880 | 5.7E-10 | IPR011993 |
| SMART | SM00233 | PH_update | 766 | 879 | 1.1E-10 | IPR001849 |
| ProSiteProfiles | PS50003 | PH domain profile. | 765 | 877 | 11.5536 | IPR001849 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 4361 | 4384 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2216 | 2238 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2218 | 2238 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G17140.3 | pleckstrin homology (PH) domain-containing protein. | 0 |
| RefSeq | XP_030947782.1 | uncharacterized protein LOC115971846 [Quercus lobata] | 0 |
| G0S3B8 | Intermembrane lipid transfer protein VPS13 OS=Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) OX=759272 GN=VPS13 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5N6R5X6 | PH domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_012359 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology